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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 21:56:36 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Penicil_amidase.html
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#====================================
# Aligned_structures: 2
#   1: 1e3aa.pdb
#   2: 1fm2a.pdb
#
# Length:        907
# Identity:      121/907 ( 13.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    121/907 ( 13.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          337/907 ( 37.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1e3aa.pdb               1  SSS----------EIKIVRDEYGMPHIYANDTWHLFYGYGYVVAQDRLFQMEMARRSTQG   50
1fm2a.pdb               1  ---QAPIAAYKPRSNEILWDGYGVPHIYGVDAPSAFYGYGWAQARSHGDNILRLYGEARG   57
                                           I  D YG PHIY  D    FYGYG   A               G

1e3aa.pdb              51  TVAEVLGKDFVKFDKDIRRNYWPDAIRAQIAALSPEDMSILQGYADGMNAWIDKVNTNPE  110
1fm2a.pdb              58  KGAEYWGPDYEQTTVWLLTNGVPERAQQWYAQQSPDFRANLDAFAAGINAYAQQNP---D  114
                             AE  G D          N  P       A  SP     L   A G NA          

1e3aa.pdb             111  TLLPKQFNTFGFTPKRWE--PFDVAMIFVGTMANRFSDSTSEIDNLALLTALKDKYGVSQ  168
1fm2a.pdb             115  DI-SPEVR----QVLPVSGADVVAHAH----RLNFLYV----------------------  143
                                                            N                          

1e3aa.pdb             169  GMAVFNQLKWLV-NPSAPTTIAVQESNYPLKFNQQNSQTAALLPRYDLPAPMLDRPAKGA  227
1fm2a.pdb             144  ------------ASPGR-------------------------------------------  148
                                         P                                             

1e3aa.pdb             228  DGALLALAAGKNRETIAAQFAQGGANGLAGYPTG---SNMWVIGKSKAQDAKAIMVNGPQ  284
1fm2a.pdb             149  ----------------------------------TLGSNSWAVAPGKTANGNALLLQNPH  174
                                                                SN W     K     A     P 

1e3aa.pdb             285  FGWYAPA----YTYGIGLHGAGYDVTGNTPFAYPGLVFGHNGVISWGSTAGFGDD-VDIF  339
1fm2a.pdb             175  LSWT---TDYFTYYEAHLVTPDFEIYGATQIGLPVIRFAFNQR-GITNTVNG--VGATNY  228
                             W          Y   L        G T    P   F  N       T           

1e3aa.pdb             340  AERLSAEKPGYYLHNGKWVKMLSREETITVK----NGQAETFTVWRTVHGNILQTDQTTQ  395
1fm2a.pdb             229  RLTLQ--DG-GYLYDGQVRPFERRQASYRLRQADGSTVDKPLEIRSSVHGPVFE-RADGT  284
                              L       YL  G       R                       VHG          

1e3aa.pdb             396  TAYAKSRAWDGKEVASLLAWTHQMKAKNWQEWTQQAAKQ--ALTINWYYADVNGNIGYVH  453
1fm2a.pdb             285  -AVAVRVAGLDRP--GLEQ-YFDITAHSFDDYEAAA---RQVPTFNIVYADREGTINYSF  337
                            A A   A        L        A         A       T N  YAD  G I Y  

1e3aa.pdb             454  TGAYPDRQSGH---DPRLPVPGTGK-WDWKGLLPFEMNPKVYNPQSGYIANWNNSPQ---  506
1fm2a.pdb             338  NGVAPKRAEG-DIAFWQGNVPGDSSRYLWTETHPLDDLPRVTNPPGGFVQNSNDPPWTPT  396
                            G  P R  G         VPG      W    P    P V NP  G   N N  P    

1e3aa.pdb             507  -------KDYPASDLFAFLWGGA-DRVTEIDRLLEQKPRLTADQAWDVIRQTSRQDLNLR  558
1fm2a.pdb             397  WPVTYCPANHPSY---LAPQTPHSLRAQQSVRL-SENDDLTLERFA-LQFS--HRA-VAD  448
                                     P              R     RL      LT                   

1e3aa.pdb             559  LFLPTLQAATSGLTQSD-PRRQLVETLTRWDGINLLNDDGKTWQQPGSAILNVWLTSMLK  617
1fm2a.pdb             449  RTLPDLIPAALIDP--DPEVQAAARLLAAWDRDFT-------SDSRAALLFEEWARLFAG  499
                             LP L  A       D         L  WD                      W      

1e3aa.pdb             618  RTVVAAVPMPFDKWYSASGYETTQDGPTGSLNISVGAKILY-EAVQGDKSPIPQAVDLFA  676
1fm2a.pdb             500  -----------------------QNFA--------------GQAAFATP---WSLD----  515
                                                  Q                   A                

1e3aa.pdb             677  --------GKPQQEVVLAALEDTWETLSKRYGNNVSNWKTPAMALTFRANNFFGVPQAAA  728
1fm2a.pdb             516  KPVSTPYGVR-DPKAAVDQLRTAIANTKRKYGA-IDR-PFG-------------------  553
                                              L          YG                            

1e3aa.pdb             729  ------EETRHQA-----------------------EYQNRGTENDMIVFSPTTSD----  755
1fm2a.pdb             554  DASRILNDVNVPGAAGYGNLGSFRVFTWSDPDENGIRTPVHGE-------------TWVA  600
                                                                    G                  

1e3aa.pdb             756  ---R-PVLAWDVVAPGQSGFIAPDGTVDKHYEDQLKMYENFGRKSLWLTKQDVEAHKESQ  811
1fm2a.pdb             601  IEFSTPVRAYGL-SYGNSRQP-----GTTHYSDQIERVSRADFRELLLRREQVEAAVQER  654
                                PV A      G S           HY DQ           L L    VEA     

1e3aa.pdb             812  EVLHVQR  818
1fm2a.pdb             655  TPFNF--  659
                                  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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