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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:34:20 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Plectin.html
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#====================================
# Aligned_structures: 2
#   1: 1lm5a.pdb
#   2: 1lm7a.pdb
#
# Length:        246
# Identity:       54/246 ( 22.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     54/246 ( 22.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           65/246 ( 26.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1lm5a.pdb               1  ----------------------------------------------SSPIAAIFDTENLE   14
1lm7a.pdb               1  SFQGIRQPVTVTELVDSGILRPSTVNELESGSYDEVGERIKDFLQGSSCIAGIYNETTKQ   60
                                                                         SS IA I       

1lm5a.pdb              15  KISITEGIERGIVDSITGQRLLEAQACTGGIIHPTTGQKLSLQDAVSQGVIDQDMATRLK   74
1lm7a.pdb              61  KLGIYEAMKIGLVRPGTALELLEAQAATGFIVDPVSNLRLPVEEAYKRGLVGIEFKEKLL  120
                           K  I E    G V   T   LLEAQA TG I  P     L    A   G         L 

1lm5a.pdb              75  PAQKAFIGF-------KMSAAEAVKEKWLPYEAGQRFLEFQYLTGGLVDPEVHGRISTEE  127
1lm7a.pdb             121  SAERAVTGYNDPETGNIISLFQAMNKELIEKGHGIRLLEAQIATGGIIDPKESHRLPVDI  180
                            A  A  G          S   A          G R LE Q  TGG  DP    R     

1lm5a.pdb             128  AIRKGFIDGRAAQRLQDTSSY----AKILTCPKTKLKISYKDAINRSMVEDITGLRLLEA  183
1lm7a.pdb             181  AYKRGYFNEELSEILS-D---PSDDTKGFFDPNTEENLTYLQLKERCIKDEETGLCLLPL  236
                           A   G         L           K    P T     Y     R      TGL LL  

1lm5a.pdb             184  ASVSSK  189
1lm7a.pdb             237  KE----  238
                                 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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