################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 09:22:14 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/RGS.html
################################################################################################
#====================================
# Aligned_structures: 4
#   1: 1agre.pdb
#   2: 1cmza.pdb
#   3: 1dk8a.pdb
#   4: 1fqia.pdb
#
# Length:        152
# Identity:       22/152 ( 14.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     42/152 ( 27.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           32/152 ( 21.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1agre.pdb               1  VS-------QEEVKKWAESLENLINHECGLAAFKAFLKSEYSEENIDFWISCEEYKKIKS   53
1cmza.pdb               1  PS-------PEEVQSWAQSFDKLMHSPAGRSVFRAFLRTEYSEENMLFWLACEELKAEAN   53
1dk8a.pdb               1  --GSASPT--PPYLKWAESLHSLLDDQDGISLFRTFLKQEGCADLLDFWFACTGFRKLEP   56
1fqia.pdb               1  ---KLVDIPTKRVERWAFNFSELIRDPKGRQSFQHFLRKEFSGENLGFWEACEDLKYGDQ   57
                                       v  WA s   L     G   F  FL  E s en  FW aCe  k    

1agre.pdb              54  ----PSKLSPKAKKIYNEFISV-QATKE-VNLDSCTREETSRNM-L-EPTITCFDEAQKK  105
1cmza.pdb              54  ----QHVVDEKARLIYEDYVSI-LSPKE-VSLDSRVREGINKKM-Q-EPSAHTFDDAQLQ  105
1dk8a.pdb              57  CDSNEEKRLKLARAIYRKYILDNNGIVSR-QTKPATKSFIKGCIMKQLIDPAMFDQAQTE  115
1fqia.pdb              58  ----S-KVKEKAEEIYKLFLAP-GARRW-INIDGK-TDITVKGL-K-HPHRYVLDAAQTH  107
                                 k   kA  IY                d               p    fD AQ  

1agre.pdb             106  IFNLMEKDSYRRFLKSRFYLDLT---------  128
1cmza.pdb             106  IYTLMHRDSYPRFLSSPTYRALL---------  128
1dk8a.pdb             116  IQATMEENTYPSFLKSDIYLEYTRTGSESPKV  147
1fqia.pdb             108  IY-L-KKDSYARYLKSPIYKELAKAIEP----  133
                           I  l   dsY rfLkS  Y  l          


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################