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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:01:01 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Rib_hydrolayse.html
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#====================================
# Aligned_structures: 2
#   1: 1isia.pdb
#   2: 1lbea.pdb
#
# Length:        264
# Identity:       81/264 ( 30.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     81/264 ( 30.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           28/264 ( 10.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1isia.pdb               1  WRAEGTSAHLRDIFLGRCAEYRALLSPEQ--------RNKDCTAIWEAFKV-ALDKDPCS   51
1lbea.pdb               1  ---IVPTRELENVFLGRCKDYEIT-----RYLDILPRVRSDCSALWKDFFKAFSFKNPCD   52
                                    L   FLGRC  Y                   DC A W  F      K PC 

1isia.pdb              52  VLPSDYDLFITLSRHSIPRDKSLFWENSHLLVNSFADNTRRFMPLSDVLYGRVADFLSWC  111
1lbea.pdb              53  LDLGSYKDFFTSAQQQLPKNKVMFWSGVYDEAHDYANTGRKYITLEDTLPGYMLNSLVWC  112
                                Y  F T      P  K  FW          A   R    L D L G     L WC

1isia.pdb             112  RQKADSGLDYQSCPTSEDCENNP----VDSFWKRASIQYSKDSSGVIHVMLNGSEP-TGA  166
1lbea.pdb             113  GQRANPGFNEKVCPDFKTC----PVQARESFWGMASSSYAHSAEGEVTYMVDGSNPKVPA  168
                            Q A  G     CP    C          SFW  AS  Y     G    M  GS P   A

1isia.pdb             167  YPIKGFFADYEIPNLQKEKITRIEIWVMHEIGGPNVESCGEGSMKVLEKRLKDMGFQYSC  226
1lbea.pdb             169  YRPDSFFGKYELPNLT-NKVTRVKVIVLHRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDC  227
                           Y    FF  YE PNL   K TR    V H  G    E CG GS   LEK  K   F   C

1isia.pdb             227  INDYRPVKLLQCVDHSTHPDCALK  250
1lbea.pdb             228  VENPRAVLFLLCSDNPNARECRL-  250
                               R V  L C D      C L 


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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