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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 09:23:40 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Ribosomal_L6_D.html
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#====================================
# Aligned_structures: 4
#   1: 1jj2e1.pdb
#   2: 1jj2e2.pdb
#   3: 1rl6a1.pdb
#   4: 1rl6a2.pdb
#
# Length:        112
# Identity:        0/112 (  0.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:      7/112 (  6.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           53/112 ( 47.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1jj2e1.pdb              1  PRV--ELEIP-E-DVDAEQDHLDITVEG----DNGSVTRRLWYPDIDVSVDG-DTVVIES   51
1jj2e2.pdb              1  WEYGMEVFYS-HFPMQVNVEGDEVVIENFLGE-KAPRRTTI-HGDTDVEIDG-EELTVSG   56
1rl6a1.pdb              1  -----PIEIP-A-GVTVTVNGNTVTVKG----PKGELTRTF-HPDMTITVEG-NVITVTR   47
1rl6a2.pdb              1  YEKA--LELVGV-GYRASKQGKKLVLSV--GY-SHPVEIEP-EEGLEIEVPSQTKIIVKG   53
                                  e            g                       d    v g     v  

1jj2e1.pdb             52  DEDNAKTMSTIGTFQSHIENMFHGV------------------------TEG   79
1jj2e2.pdb             57  PDI-EAVGQTAADIEQLTR-----INDKDVRVFQDGVYIT------RKP---   93
1rl6a1.pdb             48  PSDEKHHRALHGTTRSLLANMVEGV------------------------SKG   75
1rl6a2.pdb             54  -A----DKQRVGELAANIRAVRP----PE-PYKGKGIRYEGELVRL------   89
                                      g                                        


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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