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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:47:47 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/SAP.html
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#====================================
# Aligned_structures: 3
#   1: 1h1js.pdb
#   2: 1jeqa.pdb
#   3: 1kcfa.pdb
#
# Length:         74
# Identity:        1/ 74 (  1.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:      4/ 74 (  5.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           55/ 74 ( 74.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1h1js.pdb               1  --YSEEELKTHISKGTLG-------------------KFTVPMLKEACRAYGLKSGLKKQ   39
1jeqa.pdb               1  -------------------------------------TVKLSFLQHICKLTGLSRSGRKD   23
1kcfa.pdb               1  GS------------ADYSSLTVVQLKDLLTKRNLSVG-GLKNELVQRLIKDD--------   39
                                                                      L   c   g        

1h1js.pdb              40  ELLEALTKHFQD--   51
1jeqa.pdb              24  ELLRRIVDSPI-YP   36
1kcfa.pdb              40  ------EESKG---   44
                                   s     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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