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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:10:51 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/SCP2.html
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#====================================
# Aligned_structures: 2
#   1: 1c44a.pdb
#   2: 1ikta.pdb
#
# Length:        130
# Identity:       41/130 ( 31.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     41/130 ( 31.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           22/130 ( 16.9%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1c44a.pdb               1  SSAGDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKNGKGS   60
1ikta.pdb               1  ------LQSTFVFEEIGRRLKDIGPEVVKKVNAVFEWHITK-GGNIGAKWTIDLKSGSGK   53
                                      VF EI   L   G   VKK    F        G   A W  D K G G 

1c44a.pdb              61  VLPNSD-K-KADCTITMADSDLLALMTGKMNPQSAFFQGKLKITGNMGLAMKLQNL-QLQ  117
1ikta.pdb              54  VYQGP-AKGAADTTIILSDEDFMEVVLGKLDPQKAFFSGRLKARGNIMLSQKLQMILKD-  111
                           V      K  AD TI   D D      GK  PQ AFF G LK  GN  L  KLQ      

1c44a.pdb             118  PGKAKL----  123
1ikta.pdb             112  ------YAKL  115
                                     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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