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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Mon Jul 25 15:39:48 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/SET.html
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#====================================
# Aligned_structures: 2
#   1: 1ml9a.pdb
#   2: 1mvha.pdb
#
# Length:        296
# Identity:       99/296 ( 33.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     99/296 ( 33.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           73/296 ( 24.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1ml9a.pdb               1  -------------------------QLPISIVNREDDA-FLNPNFRFIDHSIIGKNVPVA   34
1mvha.pdb               1  KLDSYTHLSFYEKRELFRKKLREIEGPEVTLVNEVDDEPCPSLDFQFISQYRLTQGVIPP   60
                                                          VN  DD       F FI        V   

1ml9a.pdb              35  DQSFRVGCSCA-----SDEECMYSTCQCLDEMAPDK-RFAYYSQGAKK-GLLRDRVLQSQ   87
1mvha.pdb              61  DPNFQSGCNCSSLGGCDLNN--PSRCECLDDLDEP-THFAYD-----AQGRVRADT----  108
                           D  F  GC C             S C CLD        FAY        G  R       

1ml9a.pdb              88  E-PIYECHQGCACSKDCPNRVVERGRTVPLQIFRTKDRGWGVKCPVNIKRGQFVDRYLGE  146
1mvha.pdb             109  GAVIYECNSFCSCSMECPNRVVQRGRTLPLEIFKTKEKGWGVRSLRFAPAGTFITCYLGE  168
                              IYEC   C CS  CPNRVV RGRT PL IF TK  GWGV        G F   YLGE

1ml9a.pdb             147  IITSEEADRRRAESTIARRKD----VYLFALDKFSDPDSLDPLLAGQPLEVDGEYMSGPT  202
1mvha.pdb             169  VITSAEAAKRDKNYD------DDGITYLFDLDMFD--------DAS-EYTVDAQNYGDVS  213
                            ITS EA  R                YLF LD F          A     VD        

1ml9a.pdb             203  RFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVN--------  250
1mvha.pdb             214  RFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKDFSPVQ  269
                           RF NHSC PN AI   V  H    I DLA FAIKDI    ELTFDY          


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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