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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:17:06 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/SIS.html
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#====================================
# Aligned_structures: 2
#   1: 1moq1.pdb
#   2: 1moq2.pdb
#
# Length:        217
# Identity:       20/217 (  9.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     20/217 (  9.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           68/217 ( 31.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1moq1.pdb               1  GDKGIYR-----HYMQKEIYEQPNAIKNTLTGRISHGQVDLSELGPNADELLSKVEHIQI   55
1moq2.pdb               1  -------DASIEHDIVHGLQALPSRIEQMLSQD-K--------RIEALAEDFSDKHHALF   44
                                       H         P  I   L                   E  S   H   

1moq1.pdb              56  LACGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVRR------NSLMITLSQSGE  109
1moq2.pdb              45  LGRGDQYPIALEGALKLKEISYIHAEAYAAGELKHGP-----LALIDADMPVIVVA---P   96
                           L  G  Y               I      A E                    I       

1moq1.pdb             110  -TADTLAGLRLSKELG---YLGSLAICNVPGSSLVRE---S-DLALMTNAGTEIGVASTK  161
1moq2.pdb              97  NNELLEKLKSNIEEVRARGG-QLYVFADQ-DAGF---VSSDNMHIIEMP--HVE---EVI  146
                                        E                                              

1moq1.pdb             162  AFTTQLTVLLMLVAKLSRLKGL---------------  183
1moq2.pdb             147  APIFYTVPLQLLAYHVALIKGTDVDQPRNLAKSVTVE  183
                           A       L  L       KG                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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