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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:42:48 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Transaldolase.html
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#====================================
# Aligned_structures: 2
#   1: 1f05a.pdb
#   2: 1onra.pdb
#
# Length:        325
# Identity:      188/325 ( 57.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    188/325 ( 57.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           12/325 (  3.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1f05a.pdb               1  MESALDQLKQFTTVVADTGDFHAIDEYKPQDATTNPSLILAAAQMPAYQELVEEAIAYGR   60
1onra.pdb               1  -TDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAK   59
                               L  L Q TTVVADTGD  A   Y PQDATTNPSLIL AAQ P Y  L   A A   

1f05a.pdb              61  KLGGSQEDQIKNAIDKLFVLFGAEILKKIPGRVSTEVDARLSFDKDAMVARARRLIELYK  120
1onra.pdb              60  QQSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYN  119
                                   QI  A DKL V  G EILK  PGR STEVDARLS D  A  A A RLI LY 

1f05a.pdb             121  EAGISKDRILIKLSSTWEGIQAGKELEEQHGIHCNMTLLFSFAQAVACAEAGVTLISPFV  180
1onra.pdb             120  DAGISNDRILIKLASTWQGIRAAEQLEK-EGINCNLTLLFSFAQARACAEAGVFLISPFV  178
                            AGIS DRILIKL STW GI A   LE   GI CN TLLFSFAQA ACAEAGV LISPFV

1f05a.pdb             181  GRILDWHVANTDKKSYEPLEDPGVKSVTKIYNYYKKFSYKTIVMGASFRNTGEIKALAGC  240
1onra.pdb             179  GRILDWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGYETVVMGASFRNIGEILELAGC  238
                           GRILDW  ANTDKK Y P EDPGV SV  IY YYK   Y T VMGASFRN GEI  LAGC

1f05a.pdb             241  DFLTISPKLLGELLQDNAKLVPVLSAKAAQAS--DLE-KIHLDEKSFRWLHNEDQMAVEK  297
1onra.pdb             239  DRLTIAPALLKELAESEGAIERKLSYT-----GEVKARPARITESEFLWQHNQDPMAVDK  293
                           D LTI P LL EL          LS                  E  F W HN D MAV K

1f05a.pdb             298  LSDGIRKFAADAVKLERMLTERMFN  322
1onra.pdb             294  LAEGIRKFAIDQEKLEKMIGDLL--  316
                           L  GIRKFA D  KLE M       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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