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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:00:38 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Tymo_coat.html
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#====================================
# Aligned_structures: 2
#   1: 1auya.pdb
#   2: 1qjza.pdb
#
# Length:        181
# Identity:       57/181 ( 31.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     57/181 ( 31.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           20/181 ( 11.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1auya.pdb               1  ------------------SPLTIKQPFQSEVLFAGTKDAEASLTIANIDSVSTLTTFYRH   42
1qjza.pdb               1  KQASIPAPGSILSQPNTEQSPAIVLPFQFEATTFGTAETAAQVSLQTADPITKLTAPYRH   60
                                                 I  PFQ E    GT    A       D    LT  YRH

1auya.pdb              43  ASLESLWVTIHPTLQAPTFPTTVGVCWVPAQSPVTPAQITKTYGGQIFCIGGAIQTLSPL  102
1qjza.pdb              61  AQIVECKAILTPTDLAVSNPLTVYLAWVPANSPATPTQILRVYGGQSFVLGGAISAAKTI  120
                           A          PT  A   P TV   WVPA SP TP QI   YGGQ F  GGAI      

1auya.pdb             103  IVKCPLEMMQPRVKDSIQYLDSPKLLISITAQPTAPPASTCIITVSGTLSMHSPLITDTS  162
1qjza.pdb             121  EVPLNLDSVNRMLKDSVTYTDTPKLLAYSRAPTNPSKIPTASIQISGRIRLSKPMLIAN-  179
                            V   L       KDS  Y D PKLL    A        T  I  SG      P      

1auya.pdb             163  T  163
1qjza.pdb                  -     
                            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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