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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:04:05 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Uricase.html
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#====================================
# Aligned_structures: 2
#   1: 1uox1.pdb
#   2: 1uox2.pdb
#
# Length:        171
# Identity:       10/171 (  5.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     10/171 (  5.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           47/171 ( 27.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1uox1.pdb               1  SA-V-KAARYGKDNVRVYKVHK--------DEKT------GVQTVYEMTVCVLLEGEI--   42
1uox2.pdb               1  --GKGIDIKSSLSGLTVLKST-NSQFWGFLRDEYTTLKETW-DRILSTDVDATWQWK-NF   55
                                           V K                              V          

1uox1.pdb              43  ETSYT-KADNSVIVATD----SIKNTIYITAKQNPVTPPELFGSILGTHFIEKYNHIHAA   97
1uox2.pdb              56  SGLQEVRSHVP---KFDATWATAREVTLKTFAEDNSASVQATMYKMAEQILARQQLIETV  112
                                           D            T                          I   

1uox1.pdb              98  HVNIVCHRWTRMDIDGKPH-----------PHSFIRDSEEKRNVQVDVVE-  136
1uox2.pdb             113  EYSLPNKHYFEIDLS----WHKGLQNTGKNAEVFAPQSDPNGLIKCTVGRS  159
                                       D                    F   S         V   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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