################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Sat Jul 23 09:34:42 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/WW.html ################################################################################################ #==================================== # Aligned_structures: 4 # 1: 1e0la.pdb # 2: 1eg4a.pdb # 3: 1i5hw.pdb # 4: 1pina.pdb # # Length: 80 # Identity: 0/ 80 ( 0.0%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 1/ 80 ( 1.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 71/ 80 ( 88.8%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1e0la.pdb 1 G-ATA-------VSE--------------WTEYKTA------D-G-KTYYYN----NRT- 25 1eg4a.pdb 1 -----PASQHFLST-S-------VQG--PWERAISP------NKV-PYYINH----E-T- 32 1i5hw.pdb 1 -GSPV-----------DSNDLGPLPPG-W-------EERTHTD--GRV----FFINHN-I 33 1pina.pdb 1 ----------------------KLPPGWE-------KRMSRSS--GRV----YYFNHI-T 24 1e0la.pdb 26 LESTW-EKPQELK------- 37 1eg4a.pdb 33 QTTCW-D------------- 38 1i5hw.pdb 34 KKTQ-WEDPRM-QNVAITG- 50 1pina.pdb 25 NASQ-WERPS---------G 34 e #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################