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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:12:35 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/XPG_NC.html
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#====================================
# Aligned_structures: 2
#   1: 1a77.pdb
#   2: 1b43a.pdb
#
# Length:        359
# Identity:      151/359 ( 42.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    151/359 ( 42.1%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           64/359 ( 17.8%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a77.pdb                1  GVQFGDFIPKNIISFEDLKGKKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNGV   60
1b43a.pdb               1  GVPIGEIIPRKEIELENLYGKKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGL   60
                           GV  G  IP   I  E L GKK AID  NA YQFL  IR  DG PL   KG ITS   G 

1a77.pdb               61  FYKTIHLLENDITPIWVFDGEPPKLKEKTRKVRREMKEKAELKMKEAI---KKEDFEEAA  117
1b43a.pdb              61  FYRTINLMEAGIKPVYVFDGEPP------EFKKK--ELEKR---REAREEAEEKWREAL-  108
                           FY TI L E  I P  VFDGEPP                      EA         E   

1a77.pdb              118  KY---------------AKRVSYLTPKMVENCKYLLSLMGIPYVEAPSEGEAQASYMAKK  162
1b43a.pdb             109  --EKGEIEEARKYAQRATRV----NEMLIEDAKKLLELMGIPIVQAPSEGEAQAAYMAAK  162
                                                        E  K LL LMGIP V APSEGEAQA YMA K

1a77.pdb              163  GDVWAVVSQDYDALLYGAPRVVRNLTTT-------------KEMPELIELNEVLEDLRIS  209
1b43a.pdb             163  GSVYASASQDYDSLLFGAPRLVRNLTITGKRKLPGKNVYVEI-KPELIILEEVLKELKLT  221
                           G V A  SQDYD LL GAPR VRNLT T                PELI L EVL  L   

1a77.pdb              210  LDDLIDIAIFMGTDYNPGGVKGIGFKRAYELVRSG--VAKDVLKKEV-EYYDEIKRIFKE  266
1b43a.pdb             222  REKLIELAILVGTDYNPGGIKGIGLKKALEIVRHSKDP-LAKFQKQSDVDLYAIKEFFLN  280
                              LI  AI  GTDYNPGG KGIG K A E VR           K        IK  F  

1a77.pdb              267  PKVTDNYSLSLKLPDKEGIIKFLVDENDFNYDRVKKHVDKLYNLIANKT----------  315
1b43a.pdb             281  PPVTDNYNLVWRDPDEEGILKFLCDEHDFSEERVKNGLERLKKAIKSGKQSTLESWFKR  339
                           P VTDNY L    PD EGI KFL DE DF   RVK     L   I              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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