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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 00:13:24 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/XPG_NI.html
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#====================================
# Aligned_structures: 2
#   1: 1a77.pdb
#   2: 1b43a.pdb
#
# Length:        241
# Identity:      100/241 ( 41.5%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    100/241 ( 41.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           56/241 ( 23.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a77.pdb                1  GVQFGDFIPKNIISFEDLKGKKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNGV   60
1b43a.pdb               1  GVPIGEIIPRKEIELENLYGKKIAIDALNAIYQFLSTIRQKDGTPLMDSKGRITSHLSGL   60
                           GV  G  IP   I  E L GKK AID  NA YQFL  IR  DG PL   KG ITS   G 

1a77.pdb               61  FYKTIHLLENDITPIWVFDGEPPKLKEKTRKVRREMKEKAELKMKEAIKKED--FEEA-A  117
1b43a.pdb              61  FYRTINLMEAGIKPVYVFDGEPP------EFKKK--ELEKR-----------REAREEAE  101
                           FY TI L E  I P  VFDGEPP                                 E   

1a77.pdb              118  KYAKRVSYL------------------TPKMVENCKYLLSLMGIPYVEAPSEGEAQASYM  159
1b43a.pdb             102  EKWREAL--EKGEIEEARKYAQRATRVNEMLIEDAKKLLELMGIPIVQAPSEGEAQAAYM  159
                                                           E  K LL LMGIP V APSEGEAQA YM

1a77.pdb              160  AKKGDVWAVVSQDYDALLYGAPRVVRNLTTT-------------KEMPELIELNEVLEDL  206
1b43a.pdb             160  AAKGSVYASASQDYDSLLFGAPRLVRNLTITGKRKLPGKNVYVEI-KPELIILEEVLKEL  218
                           A KG V A  SQDYD LL GAPR VRNLT T                PELI L EVL  L

1a77.pdb              207  R  207
1b43a.pdb             219  K  219
                            


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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