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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 04:42:59 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/Yers_vir_YopE.html
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#====================================
# Aligned_structures: 3
#   1: 1g4wr.pdb
#   2: 1he1a.pdb
#   3: 1hy5a.pdb
#
# Length:        139
# Identity:        8/139 (  5.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     48/139 ( 34.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           50/139 ( 36.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1g4wr.pdb               1  ----------------LLDIALKGLKRTLPQLEQMDGNSL-R----------PLRSLMTN   33
1he1a.pdb               1  --ASSAVVFKQMVLQQALPMT-LKGLDKASELATLTPEGLAREHSRLASGDGALRSLSTA   57
1hy5a.pdb               1  TS----------FSDSIKQLA-AETLPKYQQLNSLDAE-LQKNHDQFATGSGPLRGSITQ   48
                                            l  a    l k  qL  ld e L r          pLRsl T 

1g4wr.pdb              34  LQNLN----K-QLNDYVTTLTNIQVGVARFSQW-----EVERWVDAS--THELTQAVKKI   81
1he1a.pdb              58  LAGIRAGSQVEESRIQAGRLLERSIGGIALQQWGTTGGAASQLVLDA-SPELRREITDQL  116
1hy5a.pdb              49  CQGLQ-FC-GGELQAEASAILNTPVCGIPFSQWGTIGGAASAYVASGV---DLTQAANEI  103
                           lqgl       el   a  lln  vggi fsQW     aas  V        ltqa   i

1g4wr.pdb              82  HVIAKELKNVTAELEKI--   98
1he1a.pdb             117  HQVMSEVALLRQAVESEVS  135
1hy5a.pdb             104  KGLAQQQ-KLLSL------  115
                           h  a e   l         


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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