################################################################################################
# Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 21:30:54 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/aat.html
################################################################################################
#====================================
# Aligned_structures: 10
# 1: 1ajsa.pdb
# 2: 1ama.pdb
# 3: 1ars.pdb
# 4: 1ay8a.pdb
# 5: 1b8ga.pdb
# 6: 1bjwa.pdb
# 7: 1bw0a.pdb
# 8: 1yaaa.pdb
# 9: 2csta.pdb
# 10: 3tata.pdb
#
# Length: 513
# Identity: 11/513 ( 2.1%) (Calculated as the percentage of conserved columns in the alignment.)
# Similarity: 19/513 ( 3.7%) (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps: 186/513 ( 36.3%) (Calculated as the percentage of columns with atleast one gap.)
#===========================================ALIGNMENT START=========================================
1ajsa.pdb 1 -APPSVFA-EV-------PQAQPVLVFKLIADFREDP-D------PRKVNLGVGAYR-TD 43
1ama.pdb 1 ---SSWWS-HV-------EMGPPDPILGVTEAFKRDT-N------SKKMNLGVGAYR-DD 41
1ars.pdb 1 -----MFE-NI-------TAAPADPILGLADLFRADE-R------PGKINLGIGVYK-DE 39
1ay8a.pdb 1 -----MLG-NL-------KPQAPDKILALMGEFRADP-R------QGKIDLGVGVYK-DA 39
1b8ga.pdb 1 -----------MLSRNAT-----SSYFLGWQEYEKNPYHEVHNT-NGIIQMGLAEN---- 39
1bjwa.pdb 1 --------M-RGLSRRVQAMK-PSATVAVNAKALELRRQ-----GVDLVALTAGEP---- 41
1bw0a.pdb 1 -------WD-VSMSNHAGLVF--NPIRTVSDNAK-PSPS-----PKPIIKLSVGDPTL-- 42
1yaaa.pdb 1 S--ATLFN-NI-------ELLPPDALFGIKQRYGQDQ-R------ATKVDLGIGAYR-DD 42
2csta.pdb 1 --AASIFA-AV-------PRAPPVAVFKLTADFREDG-D------SRKVNLGVGAYR-TD 42
3tata.pdb 1 -----MFQ-KV-------DAYAGDPILTLMERFKEDP-R------SDKVNLSIGLYY-NE 39
l g
1ajsa.pdb 44 DCQPWVLPVVRKVEQRI---ANN---------SSLNHEYLPILGLAEFRTCASRLALG-- 89
1ama.pdb 42 NGKPYVLNCVRKAEAMI---AAK---------K-MDKEYLPIAGLADFTRASAELALG-- 86
1ars.pdb 40 TGKTPVLTSVKKAEQYL---LEN---------E-TTKNYLGIDGIPEFGRCTQELLFG-- 84
1ay8a.pdb 40 TGHTPIMRAVHAAEQRM---LET---------E-TTKTYAGLSGEPEFQKAMGELILG-- 84
1b8ga.pdb 40 --QLC-FDLLESWLAKNPEAAAFKKNGESIFAE-L-ALFQDYHGLPAFKKAMVDFMAEIR 94
1bjwa.pdb 42 --DFDTPEHVKEAARRA---LAQ-----------GKTKYAPPAGIPELREALAEKFRREN 85
1bw0a.pdb 43 DKNLLTSAAQIKKLKEA---IDS---------Q-ECNGYFPTVGSPEAREAVATWWRNSF 89
1yaaa.pdb 43 NGKPWVLPSVKAAEKLI---HND---------SSYNHEYLGITGLPSLTSNAAKIIFG-- 88
2csta.pdb 43 EGQPWVLPVVRKVEQLI---AGD---------GSLNHEYLPILGLPEFRANASRIALG-- 88
3tata.pdb 40 DGIIPQLQAVAEAEARL---NAQ---------PHGASLYLPMEGLNCYRHAIAPLLFG-- 85
y G
1ajsa.pdb 90 -DDS---PALQE----KRVGGVQSLGGTGALRIGAEFLARWYNGTNNKD-TPVYVSSPTW 140
1ama.pdb 87 -ENS---EAFKS----GRYVTVQGISGTGSLRVGANFLQRFFK-----FSRDVYLPKPSW 133
1ars.pdb 85 -KGS---ALIND----KRARTAQTPGGTGALRVAADFLAKNT----S-V-KRVWVSNPSW 130
1ay8a.pdb 85 -DGL---KS-------ETTATLATVGGTGALRQALELARMAN----P-D-LRVFVSDPTW 127
1b8ga.pdb 95 GNKV-------TFDPN---HLVLTAGATSANETFIFCLA-------DPG-EAVLIPTPYY 136
1bjwa.pdb 86 G--L-------SVTPE---ETIVTVGGKQALFNLFQAIL-------DPG-DEVIVLSPYW 125
1bw0a.pdb 90 V---HKEELKSTIVKD---NVVLCSGGSHGILMAITAIC-------DAG-DYALVPQPGF 135
1yaaa.pdb 89 -TQS---DALQE----DRVISVQSLSGTGALHISAKFFSKFF----P-D-KLVYLSKPTW 134
2csta.pdb 89 -DDS---PAIAQ----KRVGSVQGLGGTGALRIGAEFLRRWYNGNNNTA-TPVYVSSPTW 139
3tata.pdb 86 -ADH---PVLKQ----QRVATIQTLGGSGALKVGADFLKRYF----P-E-SGVWVSDPTW 131
g v P
1ajsa.pdb 141 ENHNGVFTTAG-FKDIRSYRYWDTEKRGLDLQGFLSDLENAP--------EF-SIFVLHA 190
1ama.pdb 134 GNHTPIFRDAG-L-QLQAYRYYDPKTCSLDFTGAMEDISKIP--------EK-SIILLHA 182
1ars.pdb 131 PNHKSVFNSAG-L-EVREYAYYDAENHTLDFDALINSLNEAQ--------AG-DVVLFHG 179
1ay8a.pdb 128 PNHVSIMNFMG-L-PVQTYRYFDAETRGVDFEGMKADLAAAK--------KG-DMVLLHG 176
1b8ga.pdb 137 PGFDRDLKWRTGV-EIVPIHCT-SSNGFQI---TETALEEAYQEAEKRNLRV-KGVLV-T 189
1bjwa.pdb 126 VSYPEMVRFAG-G-VVVEVETL-PEEGFVP---DPERVRRAIT-------PRTKALVV-N 171
1bw0a.pdb 136 PHYETVCKAYG-I-GMHFYNCR-PENDWEA---DLDEIRRLKD-------DKTKLLIV-T 181
1yaaa.pdb 135 ANHMAIFENQG-L-KTATYPYWANETKSLDLNGFLNAIQKAP--------EG-SIFVLHS 183
2csta.pdb 140 ENHNSVFMDAG-FKDIRTYRYWDAAKRGLDLQGLLDDMEKAP--------EF-SIFILHA 189
3tata.pdb 132 ENHVAIFAGAG-F-EVSTYPWYDEATNGVRFNDLLATLKTLP--------AR-SIVLLHP 180
g
1ajsa.pdb 191 CAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFA----S-G----NLEKDAWAIR 241
1ama.pdb 183 CAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFA----S-G----DINRDAWALR 233
1ars.pdb 180 CCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFA----R------GLEEDAEGLR 229
1ay8a.pdb 177 CCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFG----D------GLEEDAAGTR 226
1b8ga.pdb 190 NPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTA----FS-SPSF----I-SVME 239
1bjwa.pdb 172 SPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLL----Y--EGEH----F-SPGR 220
1bw0a.pdb 182 NPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKD-PNATF----T-SVAD 235
1yaaa.pdb 184 CAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFA----T-G----DLDKDAYAVR 234
2csta.pdb 190 CAHNPTGTDPTPDEWKQIAAVMKRRCLFPFFDSAYQGFA----S-G----SLDKDAWAVR 240
3tata.pdb 181 CCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFG----A-G-----MEEDAYAIR 230
NP G D Y g
1ajsa.pdb 242 YFVSE--------G-F--ELFCAQSFSKNFGLYNERVGNLTVVAK-----EPDSILRVLS 285
1ama.pdb 234 HFIEQ--------G-I--DVVLSQSYAKNMGLYGERAGAFTVICR-----DAEEAKRVES 277
1ars.pdb 230 AFAAM--------H-K--ELIVASSYSKNFGLYNERVGACTLVAA-----DSETVDRAFS 273
1ay8a.pdb 227 LIASR--------I-P--EVLIAASCSKNFGIYRERTGCLLALCA-----DAATRELAQG 270
1b8ga.pdb 240 VLKDRNCDENSEVW-Q--RVHVVYSLSKDLGLPGFRVGAIYSN-----------DDMVVA 285
1bjwa.pdb 221 VA-----------P-E--HTLTVNGAA-AFAMTGWRIGYACG------------PKEVIK 253
1bw0a.pdb 236 FE-----------TTV--PRVILGGTA-NLVVPGWRLGWLLYVDPH-----GN-GPSFLE 275
1yaaa.pdb 235 LGVEK--------LSTVSPVFVCQSFAKNAGMYGERVGCFHLALT-KQAQNKTIKPAVTS 285
2csta.pdb 241 YFVSE--------G-F--ELFCAQSFSKNFGLYNERVGNLSVVGK-----DEDNVQRVLS 284
3tata.pdb 231 AIASA--------G-L--PALVSNSFSKIFSLYGERVGGLSVMCE-----DAEAAGRVLG 274
R G
1ajsa.pdb 286 QMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLE-AL 344
1ama.pdb 278 QLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLK-KE 336
1ars.pdb 274 QMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQ-EK 332
1ay8a.pdb 271 AMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELR-DL 329
1b8ga.pdb 286 AATKMSS-FG-LVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSG--- 340
1bjwa.pdb 254 AMASVSSQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALG--- 310
1bw0a.pdb 276 GLKRVGM-LVCGPCTVVQAALGEALLN--TPQEHLDQIVAKIEESAMYLYNHIGECIG-- 330
1yaaa.pdb 286 QLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLV-KL 344
2csta.pdb 285 QMEKIVRTTWSNPPSQGARIVATTLTSPQLFAEWKDNVKTMADRVLLMRSELRSRLE-SL 343
3tata.pdb 275 QLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLS-TE 333
p L
1ajsa.pdb 345 KTP-GTWNHITDQIGMFSFTGL-------------NPKQVEYLINQKHIYLLPS------ 384
1ama.pdb 337 GSS-HNWQHITDQIGMFCFTGL-------------KPEQVERLTKEFSIYMTKD------ 376
1ars.pdb 333 GAN-RDFSFIIKQNGMFSFSGL-------------TKEQVLRLREEFGVYAVAS------ 372
1ay8a.pdb 330 SGS-DRFGFVAEHRGMFSRLGA-------------TPEQVKRIKEEFGIYMVGD------ 369
1b8ga.pdb 341 -ISCLNG-----NAGLFCWVDM-RHLLR-SNTFEAEMELWKKIVYEVHLNISPGSSCHCT 392
1bjwa.pdb 311 -LKAVRP-----SGAFYVLMDT-SPIA---P---DEVRAAERLL-EAGVAVVPGTDFAAF 356
1bw0a.pdb 331 -LAPTMP-----RGAMYLMSRIDLEKYRDIK---TDVEFFEKLLEEENVQVLPGTIFHAP 381
1yaaa.pdb 345 GTP-GNWDHIVNQCGMFSFTGL-------------TPQMVKRLEETHAVYLVAS------ 384
2csta.pdb 344 GTP-GTWNHITDQIGMFSFTGL-------------NPKQVEYMIKEKHIYLMAS------ 383
3tata.pdb 334 MPE-RNFDYLLNQRGMFSYTGL-------------SAAQVDRLREEFGVYLIAS------ 373
1ajsa.pdb 385 ----GRINMCGLTTKNLDYVATSIHEAVTKIQ- 412
1ama.pdb 377 ----GRISVAGVASSNVGYLAHAIHQVTK---- 401
1ars.pdb 373 ----GRVNVAGMTPDNMAPLCEAIVAVL----- 396
1ay8a.pdb 370 ----SRINIAGLNDNTIPILARAIIEVGV---- 394
1b8ga.pdb 393 EPGWFRVCFANLPERTLDLAMQRLKAFVG---- 421
1bjwa.pdb 357 G--HVR-LSYATSEENLRKALERFARVL----- 381
1bw0a.pdb 382 G--FTR-LTTTRPVEVYREAVERIKAFCQRHAA 411
1yaaa.pdb 385 ----GRASIAGLNQGNVEYVAKAIDEVVRFYA- 412
2csta.pdb 384 ----GRINMCGLTTKNLDYVAKSIHEAVTKIQ- 411
3tata.pdb 374 ----GRMCVAGLNTANVQRVAKAFAAVM----- 397
R
#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue = Acidic,{D,E}
# Magenta = Basic,{K,R} and
# Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################