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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:18:00 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/acyo.html
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#====================================
# Aligned_structures: 2
#   1: 1aps.pdb
#   2: 2acy.pdb
#
# Length:        104
# Identity:       53/104 ( 51.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     53/104 ( 51.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           12/104 ( 11.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1aps.pdb                1  STAR----PLKSVDYEVFGR-VQGVCFRMYAEDEARKIGVVGWVKNTSKGTVTGQVQGPE   55
2acy.pdb                1  ----AEGDTLISVDYEIFG-KVQGVFFRKYTQAEGKKLGLVGWVQNTDQGTVQGQLQGPA   55
                                    L SVDYE FG  VQGV FR Y   E  K G VGWV NT  GTV GQ QGP 

1aps.pdb               56  EKVNSMKSWLSKVGSPSSRIDRTNFSNEKTISKLEYSNFSVRY-   98
2acy.pdb               56  SKVRHMQEWLETKGSPKSHIDRASFHNEKVIVKLDYTDFQIV-K   98
                            KV  M  WL   GSP S IDR  F NEK I KL Y  F     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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