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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 18:52:29 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/aspg.html
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#====================================
# Aligned_structures: 2
#   1: 1apyb.pdb
#   2: 1ayyb.pdb
#
# Length:        152
# Identity:       50/152 ( 32.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     50/152 ( 32.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           20/152 ( 13.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1apyb.pdb               1  TIGMVVIHKTGHIAAGTSTNGIKFKIHGRVGDSPIPGAGAYADDTAGAAAATGNGDILMR   60
1ayyb.pdb               1  TIGMIALDAQGNLSGACTTSGMAYKMHGRVGDSPIIGAGLFVDNEIGAATATGHGEEVIR   60
                           TIGM      G       T G   K HGRVGDSPI GAG   D   GAA ATG G    R

1apyb.pdb              61  FLPSYQAVEYMRRGEDPTIACQKVISRIQKHFP-------EFFGAVICANVTGSYGAACN  113
1ayyb.pdb              61  TVGTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEYGAYCI  120
                                  VE M  G  P  AC     RI K                I  N  G YGA C 

1apyb.pdb             114  KLSTFTQFSFMVYNSEKNQPTEEKVDCI----  141
1ayyb.pdb             121  Q----DGFNFAVHDQK-G-NRLETP---GFAL  143
                                  F F V          E         


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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