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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 19:24:49 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/cbp.html
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#====================================
# Aligned_structures: 8
#   1: 1aj4.pdb
#   2: 1br1b.pdb
#   3: 1tn4.pdb
#   4: 2sas.pdb
#   5: 2scpa.pdb
#   6: 3cln.pdb
#   7: 4cln.pdb
#   8: 5tnc.pdb
#
# Length:        227
# Identity:        6/227 (  2.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     18/227 (  7.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          107/227 ( 47.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1aj4.pdb                1  -A---DIYKAAVEQLTEEQKNEFKAAFD-IFVLGAEDGSIS----TKELGKVMRMLG--Q   49
1br1b.pdb               1  --------------FSEEQTAEFKEAFQ-LFDR-TGDGKILYSQCGDVMRALG------Q   38
1tn4.pdb                1  ----TDQQAEARSYLSEEMIAEFKAAFD-MFDA-DGGGDIS----VKELGTVMRMLG--Q   48
2sas.pdb                1  -------------GLNDFQKQKIKFTFDFFLDM-NHDGSIQ----DNDFEDMMTRYKEVN   42
2scpa.pdb               1  ---------------SDLWVQKMKTYFN-RIDF-DKDGAIT----RMDFESMAERFAKES   39
3cln.pdb                1  ---------------TEEQIAEFKEAFS-LFDK-DGDGTIT----TKELGTVMRSLG--Q   37
4cln.pdb                1  A-----------DQLTEEQIAEFKEAFS-LFDK-DGDGTIT----TKELGTVMRSLG--Q   41
5tnc.pdb                1  --SMTDQQAEARAFLSEEMIAEFKAAFD-MFDA-DGGGDIS----TKELGTVMRMLG--Q   50
                                                  K  F    d     G I                    

1aj4.pdb               50  -----------NPTPEEL---------QEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSK   89
1br1b.pdb              39  -----------NPTNAEVMKVLGNPKSDEMNL-------KTLKFEQFLPMMQTIAK----   76
1tn4.pdb               49  -----------TPTKEEL---------DAIIEEVDEDGSGTIDFEEFLVMMVRQMK----   84
2sas.pdb               43  KGSLSDADYKS--MQASLED-----EWRDLKGRADINKDDVVSWEEYLAMWEKTIA----   91
2scpa.pdb              40  --EMKAEHAKV--LMDSLTG-----VWDNFLTAVAG--GKGIDETTFINSMKEMVK----   84
3cln.pdb               38  -----------NP----TEA-----ELQDMINEVDADGNGTIDFPEFLTMMARKMK----   73
4cln.pdb               42  -----------NP----TEA-----ELQDMINEVDADGNGTIDFPEFLTMMARKMK----   77
5tnc.pdb               51  -----------NPTKEEL---------DAIIEEVDEDGSGTIDFEEFLVMMVRQMK----   86
                                                                         fl mm    k    

1aj4.pdb               90  G-------------K-TEEELSDLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEEL  135
1br1b.pdb              77  ---------NKDQG--CFEDYVEGLRVFDKEGNGTVMGAEIRHVLVTLGEKMTEEEVEQL  125
1tn4.pdb               85  -ED----A-K----GKSEEELAELFRIFDRNADGYIDAEELAEIFRASGEHVTDEEIESL  134
2sas.pdb               92  -TCKSVADLP----AWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQLQCA--DVPAV  144
2scpa.pdb              85  -NP---EA-K----SVVEGPLPLFFRAVDTNEDNNISRDEYGIFFGMLGLDKT--MAPAS  133
3cln.pdb               74  ---------D----TDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEM  120
4cln.pdb               78  ---------D----TDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEM  124
5tnc.pdb               87  -ED----A-K----GKSEEELEDCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDL  136
                                                   fr  D    g     E        g   t       

1aj4.pdb              136  MKDGDKNNDGRI-DYDEFLEFMKG--------------------VE-  160
1br1b.pdb             126  VAGHEDS-NGCINYEELVRMVLSG-----------------------  148
1tn4.pdb              135  MKDGDKNNDGRI-DFDEFLKMMEG-----------------------  157
2sas.pdb              145  YNVITDGGKVTF-DLNRYKELYYRLLTSPAADAGNTLMGQKP-----  185
2scpa.pdb             134  FDAIDTNNDGLL-SLEEFVIAGSDFFMNDGDSTNKVFWGP--LV---  174
3cln.pdb              121  IREANIDGDGQV-NYEEFVQMMTA-----------------------  143
4cln.pdb              125  IREADIDGDGQV-NYEEFVTMMTSK----------------------  148
5tnc.pdb              137  MKDSDKNNDGRI-DFDEFLKMMEG---------------------VQ  161
                                    g                                     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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