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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 05:29:04 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ccH.html
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#====================================
# Aligned_structures: 4
#   1: 1hfh1.pdb
#   2: 1hfh2.pdb
#   3: 1vvd1.pdb
#   4: 1vvd2.pdb
#
# Length:         69
# Identity:        9/ 69 ( 13.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     19/ 69 ( 27.5%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           15/ 69 ( 21.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1hfh1.pdb               1  EKIPCSQPPQIEHGTINS-SRSSQESYAHGTKLSYTCEGGFRISEENETTC-YMGK-WSS   57
1hfh2.pdb               1  --LPCKSPPEISHGVVAH-M---SDSYQYGEEVTYKCFEGFGIDGPAIAKC-LGEK-WSH   52
1vvd1.pdb               1  --VKCQSPPSISNGRHNG-Y---EDFYTDGSVVTYSCNSGYSLIGNSGVLC-SGGE-WSD   52
1vvd2.pdb               1  --VKCPH-PTISNGYLSSGF---KRSYSYNDNVDFKCKYGYKLSGSSSSTCSPGNTWKPE   54
                               C   P Is G           sY  g  v y C  G    g     C  g   ws 

1hfh1.pdb              58  PPQCEG---   63
1hfh2.pdb              53  PPS---CI-   57
1vvd1.pdb              53  PPTCQI---   58
1vvd2.pdb              55  LPKC--V-R   60
                           pP       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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