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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 01:25:56 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/citrate_synt.html
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#====================================
# Aligned_structures: 3
#   1: 1a59.pdb
#   2: 1aj8a.pdb
#   3: 1csh.pdb
#
# Length:        462
# Identity:       52/462 ( 11.3%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    211/462 ( 45.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          114/462 ( 24.7%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a59.pdb                1  ------------------------------EPT-------IHKGLAGVTADVTAISKVNS   23
1aj8a.pdb               1  ----------------------------------------LAKGLEDVYIDQTNICYIDG   20
1csh.pdb                1  STNLKDVLASLIPKEQARIKTFRQQHGNTA-VGQITVDMS-YGGMRGMKGLIYETSVLDP   58
                                                                     kGl gv  d t is  d 

1a59.pdb               24  DTNSLLYRGYPVQELAAKC---------SFEQVAYLLWNSELPNDSELKAFVNFERSHRK   74
1aj8a.pdb              21  KEGKLYYRGYSVEELAELS---------TFEEVVYLLWWGKLPSLSELENFKKELAKSRG   71
1csh.pdb               59  DEGIRF-RGFSIPECQKLLPKAGGGEEPLPEGLFWLLVTGQIPTPEQVSWVSKEWAKRAA  117
                           deg l  RGysv Ela l           fE v yLLw g lP  sel  f ke ak r 

1a59.pdb               75  LDENVKGAIDLLSTACHPMDVARTAVSVLGANHARA---QD-S----SPEANLEKAMSLL  126
1aj8a.pdb              72  LPKEVIEIMEALPKNTHPMGALRTIISYLGNIDDSGD--IP-V----TPEEVYRIGISVT  124
1csh.pdb              118  LPSHVVTMLDNFPTNLHPMSQLSAAITALNSESNFARAYAEGINRTKYWEFVYEDAMDLI  177
                           Lp  V    d lptn HPM  lrtais Lg     a            pE vye amsl 

1a59.pdb              127  ATFPSVVAYDQRRRR-G-EELIEPREDLDYSANFLWMTFGEEAAPEVVEAFNVSMILYAE  184
1aj8a.pdb             125  AKIPTIVANWYRIKN-G-LEYVPPKEKLSHAANFLYMLHGEEPPKEWEKAMDVALILYAE  182
1csh.pdb              178  AKLPCVAAKIYRNLYRAGSSIGAIDSKLDWSHNFTNMLG--YTDPQFTELMRLYLTIHSD  235
                           Ak P vvA  yR    g  e   p ekLd saNFl Ml   e  pe  eam v lilyae

1a59.pdb              185  H-SFNASTFTARVITSTLADLHSAVTGAIGALKGPLHGGANEAVMHTFEEIG---IRKDE  240
1aj8a.pdb             183  H-EINASTLAVMTVGSTLSDYYSAILAGIGALKGPIHGGAVEEAIKQFMEIG---S----  234
1csh.pdb              236  HEGGNVSAHTSHLVGSALSDPYLSFAAAMNGLAGPLHGLANQEVLLWLSQLQKDL-GADA  294
                           H   NaSt t   vgStLsD ysa  aaigaLkGPlHGgAneev   f eig        

1a59.pdb              241  SLDEAATRSKAWMVDALAQKKKVMGFGHRVYKNGDSRVPTMKSALDAMI--KHYDRPEML  298
1aj8a.pdb             235  ----P-EKVEEWFFKALQQKRKIMGAGHRVYKTYDPRARIFKKYASKLG------DKKLF  283
1csh.pdb              295  ----SDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPS----D-PMF  345
                                 ek   w   aL qkrkvmG GHrVyk  DpR    k  a k        d  mf

1a59.pdb              299  GLYNGLEAAMEEAKQ-------IKPNLDYPAGPTYNLMGF-DTEMFTPLFIAARITGWTA  350
1aj8a.pdb             284  EIAERLERLVEEYLSK---KG-ISINVDYWSGLVFYGMKI-PIELYTTIFAMGRIAGWTA  338
1csh.pdb              346  KLVAQLYKIVPNVLLEQGKAKNPWPNVDAHSGVLLQYYGMTEMNYYTVLFGVSRALGVLA  405
                            l   Le  vee l        i pNvDy sG     mg    e yT lF   Ri GwtA

1a59.pdb              351  HIMEQVADNALIR-PLSEYNG-PEQRQVP-------------  377
1aj8a.pdb             339  HLAEYVSHNRIIR-PRLQYVG-EIGKKYLPIELR-------R  371
1csh.pdb              406  QLIWSRALGFPLERPKSMSTAG-----------LEKLSAGG-  435
                           hl e va n  ir P s y g                     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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