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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 06:04:50 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/cytb.html
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#====================================
# Aligned_structures: 4
#   1: 1b5m.pdb
#   2: 1cxya.pdb
#   3: 1fcba.pdb
#   4: 3b5c.pdb
#
# Length:        103
# Identity:       13/103 ( 12.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     37/103 ( 35.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           27/103 ( 26.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1b5m.pdb                1  ------AVTYYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATE   54
1cxya.pdb               1  ------TLPVFTLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTE   54
1fcba.pdb               1  EPKLDMNKQKISPAEVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTA   60
3b5c.pdb                1  ------AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATE   54
                                       leevakhn     W  ihg VYDlT fl  HPGg  v    aG d Te

1b5m.pdb               55  SFEDV----GH-SPDAREM-LKQYYIGDVHPNDLKP-------   84
1cxya.pdb              55  AWETKSYGEPH-SSLAARL-LQRYLIGTL--------------   81
1fcba.pdb              61  IFEP-----LHAPNVIDKYIAPEKKLGPLQ-G-----SMPPEL   92
3b5c.pdb               55  NFEDV----GH-STDAREL-SKTFIIGELHPDDRSKI------   85
                            fE       H s  a         iG l              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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