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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 22:38:24 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/cytc.html
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#====================================
# Aligned_structures: 11
#   1: 155c.pdb
#   2: 1c2ra.pdb
#   3: 1ccr.pdb
#   4: 1cry.pdb
#   5: 1cxc.pdb
#   6: 1hroa.pdb
#   7: 1ycc.pdb
#   8: 1yea.pdb
#   9: 2c2c.pdb
#  10: 2pcbb.pdb
#  11: 5cytr.pdb
#
# Length:        151
# Identity:       12/151 (  7.9%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     17/151 ( 11.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           55/151 ( 36.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


155c.pdb                1  ---------------N-EGDAAKGEKE-FNKCKACHMIQAP-DGTDI-KGGKTGPNLYGV   41
1c2ra.pdb               1  ------------------GDAAKGEKE-FNKCKTCHSIIAPDGTEIV-KGAKTGPNLYGV   40
1ccr.pdb                1  ASFS----E--APPG----NPKAGEKIFKTKCAQCHTVDKG-------AGHKQGPNLNGL   43
1cry.pdb                1  ------------------QDAASGEQV-FKQCLVCHSIGPG-------AKNKVGPVLNGL   34
1cxc.pdb                1  ----------------QEGDPEAGAKA-FNQCQTCHVIVDDSGTTIAGRNAKTGPNLYGV   43
1hroa.pdb               1  --------S--APPG----DPVEGKHLFHTICITCHTDIK--------GANKVGPSLYGV   38
1ycc.pdb                1  ----T---E--FKAG----SAKKGATLFKTRCLQCHTVEKG-------GPHKVGPNLHGI   40
1yea.pdb                1  -----AKESTGFKPG----SAKKGATLFKTRCQQCHTIEEG-------GPNKVGPNLHGI   44
2c2c.pdb                1  -----------------EGDAAAGEKV-SKKCLACHTFDQG-------GANKVGPNLFGV   35
2pcbb.pdb               1  --------------G----DVEKGKKIFVQKCAQCHTVEKG-------GKHKTGPNLHGL   35
5cytr.pdb               1  --------------G----DVAKGKKTFVQKCAQCHTVENG-------GKHKVGPNLWGL   35
                                                  G       C  CH               K GP L G 

155c.pdb               42  VGRKIASEEGFKY-GEGILEVAEKNPDLTWTEANLIEYVTDPKPLVKKMTDDKGAKT-KM   99
1c2ra.pdb              41  VGRTAGTYPEFKY-KDSIVALGASG--FAWTEEDIATYVKDPGAFLKEKLDDKKAKT-GM   96
1ccr.pdb               44  FGRQSGTTPGYSY-STADKNMA-----VIWEENTLYDYLLNPKKYIP--------GT-KM   88
1cry.pdb               35  FGRHSGTIEGFAY-SDANKNSG-----ITWTEEVFREYIRDPKAKIP--------GTKMI   80
1cxc.pdb               44  VGRTAGTQADFKGYGEGMKEAGAKG--LAWDEEHFVQYVQDPTKFLKEYTGDAKAKG-KM  100
1hroa.pdb              39  VGRHSGIEPGYNY-SEANIKSG-----IVWTPDVLFKYIEHPQKIVP--------GT-KM   83
1ycc.pdb               41  FGRHSGQAEGYSY-TDANIKKN-----VLWDENNMSEYLTNPKKYIP--------GT-KM   85
1yea.pdb               45  FGRHSGQVKGYSY-TDANINKN-----VKWDEDSMSEYLTNPKKYIP--------GT-KM   89
2c2c.pdb               36  FENTAAHKDNYAY-SESYTEMKAKG--LTWTEANLAAYVKNPKAFVLEKSGDPKAKS-KM   91
2pcbb.pdb              36  FGRKTGQAPGFTY-TDANKNKG-----ITWKEETLMEYLENPKKYIP--------GT-KM   80
5cytr.pdb              36  FGRKTGQAEGYSY-TDANKSKG-----IVWNNDTLMEYLENPKKYIP--------GT-KM   80
                            gr         y                W       Y   P                 m

155c.pdb              100  -T-FKMGK--NQADVVAFLAQDDPD----A-  121
1c2ra.pdb              97  -A-FKLAK--GGEDVAAYLASVVK-------  116
1ccr.pdb               89  VF-PGLKKPQERADLISYLKEATS-------  111
1cry.pdb               81  -F-AGVKDEQKVSDLIAYIKQFNADGSKK--  107
1cxc.pdb              101  -T-FKLKKEADAHNIWAYLQQVAVR-----P  124
1hroa.pdb              84  -GYPGQPDPQKRADIIAYLETLK--------  105
1ycc.pdb               86  AF-GGLKKEKDRNDLITYLKKACE-------  108
1yea.pdb               90  AF-AGLKKEKDRNDLITYMTKAAK-------  112
2c2c.pdb               92  -T-FKLTKDDEIENVIAYLKTLK--------  112
2pcbb.pdb              81  IF-AGIKKKTEREDLIAYLKKATNE------  104
5cytr.pdb              81  IF-AGIKKKGERQDLVAYLKSATS-------  103
                                            y             


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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