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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 01:47:33 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/cyto.html
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#====================================
# Aligned_structures: 3
#   1: 1bgc.pdb
#   2: 1bgd.pdb
#   3: 1rhga.pdb
#
# Length:        158
# Identity:      109/158 ( 69.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    140/158 ( 88.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           13/158 (  8.2%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bgc.pdb                1  SLPQSFLLKCLEQVRKIQADGAELQERLCAAHKLCHPEELMLLRHSLGIPQAPLSSCSSQ   60
1bgd.pdb                1  -LPQSFLLKCLEQMRKVQADGTALQETLCATHQLCHPEELVLLGHALGIPQPPLSSCSSQ   59
1rhga.pdb               1  -LPQSFLLKCLEQVRKIQGDGAALQEKLCATYKLCHPEELVLLGHSLGIPWAPL------   53
                            LPQSFLLKCLEQvRKiQaDGaaLQE LCAthkLCHPEELvLLgHsLGIPqaPL      

1bgc.pdb               61  SLQLRGCLNQLHGGLFLYQGLLQALAGISPELAPTLDTLQLDVTDFATNIWLQMEDLGAA  120
1bgd.pdb               60  ALQLMGCLRQLHSGLFLYQGLLQALAGISPELAPTLDTLQLDTTDFAINIWQQMEDLGMA  119
1rhga.pdb              54  ---LAGCLSQLHSGLFLYQGLLQALEGISPELGPTLDTLQLDVADFATTIWQQMEELGM-  109
                              L GCL QLHsGLFLYQGLLQALaGISPELaPTLDTLQLDvtDFAtnIWqQMEdLGm 

1bgc.pdb              121  PAMPTFTSAFQRRAGGVLVASQLHRFLELAYRGLRYLA  158
1bgd.pdb              120  PTMPAFTSAFQRRAGGVLVASNLQSFLELAYRALRHFA  157
1rhga.pdb             110  --MPAFASAFQRRAGGVLVASHLQSFLEVSYRVLRHLA  145
                             MPaFtSAFQRRAGGVLVAS LqsFLElaYR LRhlA


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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