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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 06:05:07 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/cytprime.html
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#====================================
# Aligned_structures: 4
#   1: 1a7va.pdb
#   2: 1bbha.pdb
#   3: 1jafa.pdb
#   4: 2ccya.pdb
#
# Length:        141
# Identity:        8/141 (  5.7%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     29/141 ( 20.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           26/141 ( 18.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a7va.pdb               1  QT--------DVIAQRKAILKQMGEATKPIAAMLKGEAKFDQA-VVQKSLAAIADDSKK-   50
1bbha.pdb               1  --A--GLSPEEQIETRQAGYEFMGWNMGKIKANLEG--EYNAA-QVEAAANVIAAIANSG   53
1jafa.pdb               1  ---QF-QKPGDAIEYRQSAFTLIANHFGRVAAMAQGKAPFDAK-VAAENIALVSTLSKL-   54
2ccya.pdb               1  -----QSKPEDLLKLRQGLMQTLKSQWVPIAGFAAGKADLP--ADAAQRAENMAMVAKL-   52
                                     d i  Rq            iaa   G                 a   k  

1a7va.pdb              51  LPALFPADSKTG---GDTAALPKIW-EDKAKFDDLFAKLAAAATAAQGTI--KDEASLKA  104
1bbha.pdb              54  MGALYGPGTDKNVGDVKTRVKPEFF-QNMEDVGKIAREFVGAANTLAEVAATGEAEAVKT  112
1jafa.pdb              55  PLTAFGPGTDKG---HGTEAKPAVW-SDAAGFKAAADKFAAAVDKLDAAGKTGDFAQIKA  110
2ccya.pdb              53  APIGWAKGTEAL---PNGETKPEAFGSKSAEFLEGWKALATESTKLAAAAKA-GPDALKA  108
                                  gt        t  kP       a f       a a   l            Ka

1a7va.pdb             105  NIGGVLGNCKSCHDDFRAKKS  125
1bbha.pdb             113  AFGDVGAACKSCHEKYRAK--  131
1jafa.pdb             111  AVGETGGACKGCHDKFKE---  128
2ccya.pdb             109  QAAATGKVCKACHEEFKQD--  127
                             g  g  CK CH  f     


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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