################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Sat Jul 23 06:23:14 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ets.html ################################################################################################ #==================================== # Aligned_structures: 4 # 1: 1bc8c.pdb # 2: 1flia.pdb # 3: 1puee.pdb # 4: 2stwa.pdb # # Length: 117 # Identity: 22/117 ( 18.8%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 47/117 ( 40.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 39/117 ( 33.3%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1bc8c.pdb 1 ------------MDS-AITLWQFLLQLLQKP-QNKHMICW-TSNDGQFKLL--QAEEVAR 43 1flia.pdb 1 --------P----GSGQIQLWQFLLELLSDSAN-ASCITWEG-TNGEFKMT--DPDEVAR 44 1puee.pdb 1 ----------------KIRLYQFLLDLLRSG-DMKDSIWWVDKDKGTFQFSSKHKEALAH 43 2stwa.pdb 1 VIPAAALAGYTG--SGPIQLWQFLLELLTDK-SCQSFISW-TGDGWEFKLS--DPDEVAR 54 I LwQFLL LL I W g Fk evAr 1bc8c.pdb 44 LWGIRKNK-PNM-NYDKLSRALRYYYVKNIIKKVNGQKFVYKFVS--YPEILNM--- 93 1flia.pdb 45 RWGERKSK-P-NMNYDKLSRALRYYYDKNIMTKVHGKRYAYKFDFHGIAQAL-QPHP 98 1puee.pdb 44 RWGIQKGNRKKM-TYEKMARALRNYGKTGEVKKVKKKLTYQFS-G-EV--------- 88 2stwa.pdb 55 RWGKRKNK-PKM-NYEKLSRGLRYYYDKNIIHKTAGKRYVYRFV------------- 96 rWG rK k p m nY KlsRaLRyYy kni Kv gk y f #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################