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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 06:49:33 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/fbpase.html
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#====================================
# Aligned_structures: 4
#   1: 1bk4a.pdb
#   2: 1frpa.pdb
#   3: 1ftaa.pdb
#   4: 1spia.pdb
#
# Length:        356
# Identity:      129/356 ( 36.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    263/356 ( 73.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           55/356 ( 15.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1bk4a.pdb               1  ----------FDTDISTMTRFVMEEGRKAGGTGEMTQLLNSLCTAVKAISTAVRKAGI--   48
1frpa.pdb               1  -------------NIVTLTRFVMEQGRKARGTGEMTQLLNSLCTAVKAISTAVRK-A-GI   45
1ftaa.pdb               1  -------------DVVTLTRFVMEEGRKARGTGELTQLLNSLCTAVKAISSAVRK-A-GI   45
1spia.pdb               1  AATQTKARTRSKYEIETLTGWLLKQPMAGVIDAELTIVLSSISLACKQIASLVQR-A---   56
                                         i TlTrfvme grka gtgE TqlLnSlctAvKaIs aVrk a   

1bk4a.pdb              49  -----------KLDVLSNDLVMNMLKSSFATCVLVSEEDKNAIIVEPEKRGKYVVCFDPL   97
1frpa.pdb              46  AHLYGIAGAVKKLDVLSNDLVINVLKSSFATCVLVTEEDKNAIIVEPEKRGKYVVCFDPL  105
1ftaa.pdb              46  AHLYGIAG-VKKLDVLSNDLVMNMLKSSFATCVLVSEEDKHAIIVEPEKRGKYVVCFDPL  104
1spia.pdb              57  -----------KLDVVSNEVFSSCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPL  105
                                      KLDVlSNdlv n LkSSfaTcvlvsEEdk aiiVEpekrGkYvVcFDPL

1bk4a.pdb              98  DGSSNIDCLVSIGTIFGIYRKKST-----------------DEPSTKDA--LQPGRNLVA  138
1frpa.pdb             106  DGSSNIDCLVSIGTIFGIYRKNST-----------------DEPSEKDA--LQPGRNLVA  146
1ftaa.pdb             105  DGSSNIDCLVSVGTIFGIYRKKST-----------------DEPSEKDA--LQPGRNLVA  145
1spia.pdb             106  DGSSNIDAAVSTGSIFGIYSPND-ECIVDSDHDDESQLSAEEQRCVV--NVCQPGDNLLA  162
                           DGSSNIDclVS GtIFGIYrk s                  deps k    lQPGrNLvA

1bk4a.pdb             139  AGYALYGSATMLVLAGGSGVNSFMLDPAIGEFILVDKNVKIKKKGNIYSLNEGYAKDFDP  198
1frpa.pdb             147  AGYALYGSATMLVLAMVNGVNCFMLDPAIGEFILVDRNVKIKKKGSIYSINEGYAKEFDP  206
1ftaa.pdb             146  AGYALYGSATMLVLAMDCGVNCFMLDPAIGEFILVDKDVKIKKKGKIYSLNEAYAKDFDP  205
1spia.pdb             163  AGYCMYSSSVIFVLTIGKGVYAFTLDPMYGEFVLTSEKIQIPKAGKIYSFNEGNYKMWPD  222
                           AGYalYgSatmlVLa   GVn FmLDPaiGEFiLvd  vkIkKkG IYS NEgyaK fdp

1bk4a.pdb             199  AVTEYIQKKKFPPDNSSPYGARYVGSMVADVHRTLVYGGIFLYPANKKSPDGKLRLLYEC  258
1frpa.pdb             207  AITEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLVYGGIFMYPANKKSPKGKLRLLYEC  266
1ftaa.pdb             206  AVTEYIQRKKFPPDNSAPYGARYVGSMVADVHRTLVYGGIFLYPANKKSPNGKLRLLYEC  265
1spia.pdb             223  KLKKYMDDLKEPGESQKPYSSRYIGSLVGDFHRTLLYGGIYGYPRDAKSKNGKLRLLYEC  282
                           a teYiq kKfPpdns PYgaRYvGSmVaDvHRTLvYGGIf YPankKSp GKLRLLYEC

1bk4a.pdb             259  NPMAFIMEKAGGMATTGKEAILDIVPTDIHQRAPVILGSPDDVQEFLEIYKKHAVK  314
1frpa.pdb             267  NPMAYVMEKAGGLATTGKEAVLDIVPTDIHQRAPIILGSPEDVTELLEIYQKHA--  320
1ftaa.pdb             266  NPMAYVMEKAGGMATTGKEAVLDVIPTDIHQRAPIILGSPDDVLEFLKVYEKHS--  319
1spia.pdb             283  APMSFIVEQAGGKGSDGHQRILDIQPTEIHQRVPLYIGSVEEVEKLEKYLA-----  333
                           nPMa  mEkAGG attGkea LDi PTdIHQRaP ilGSp dV e l  y      


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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