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# Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sun Jul 24 02:37:42 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/fn3.html
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#====================================
# Aligned_structures: 14
# 1: 1boy1.pdb
# 2: 1boy2.pdb
# 3: 1cfb1.pdb
# 4: 1cfb2.pdb
# 5: 1cto.pdb
# 6: 1ebpa1.pdb
# 7: 1ebpa2.pdb
# 8: 1fnf1.pdb
# 9: 1fnf2.pdb
# 10: 1fnf3.pdb
# 11: 1fnf4.pdb
# 12: 1ten.pdb
# 13: 3hhrb1.pdb
# 14: 3hhrb2.pdb
#
# Length: 195
# Identity: 0/195 ( 0.0%) (Calculated as the percentage of conserved columns in the alignment.)
# Similarity: 2/195 ( 1.0%) (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps: 139/195 ( 71.3%) (Calculated as the percentage of columns with atleast one gap.)
#===========================================ALIGNMENT START=========================================
1boy1.pdb 1 T----T----NTV---AA-YNLTWKS-T------------NFKTILEWEP---K---P-- 27
1boy2.pdb 1 -----NL---GQP---TI-QSFEQVG---------------TKVNVTVEDER-T--LVRR 30
1cfb1.pdb 1 -IVQDVP---NAP---K--LTGITCQ--------------ADKAEIHWEQQGDNRS---- 33
1cfb2.pdb 1 ---PDVP---FKNP-DN--VVGQGTE--------------PNNLVISWTPMP-E--I--- 31
1cto.pdb 1 -------GS-SLE----PP-MLQALDIGP-DVVSH----QPGCLWLSWKPWK----P--- 35
1ebpa1.pdb 1 -------------GPEE--LLCFTER--------------LEDLVCFWEEA-AS------ 24
1ebpa2.pdb 1 ---------VLLD---AP-VGLVARLAD-----------ESGHVVLRWLPPP----E--- 29
1fnf1.pdb 1 ----------PLS---PP-TNLHLEA-N------P----DTGVLTVSWERST----T--- 28
1fnf2.pdb 1 -----------VP---PP-TDLRFTNIG------------PDTMRVTWAPPP----S--- 26
1fnf3.pdb 1 -----------LD---SP-TGIDFSDIT------------ANSFTVHWIAPR----A--- 26
1fnf4.pdb 1 ------V----SD---VP-RDLEVVAAT------------PTSLLISWDAPA----V--- 27
1ten.pdb 1 -----------LD---AP-SQIEVKDVT------------DTTALITWFKPL----A--- 26
3hhrb1.pdb 1 --------------EPKF-TKCRSPE--------------RETFSCHWTDE-V------- 23
3hhrb2.pdb 1 -----------PD---PP-IALNWTLLNVS----LTGIH--ADIQVRWEAPR----N--- 32
w
1boy1.pdb 28 --------------V--N---QVYTVQISTKS---G--D-WKSKCFYT---T-------- 51
1boy2.pdb 31 NNTFLSLRDV-F-GK--D---LIYTLYYWKSS---S--SGKKT--AKT---N-------- 65
1cfb1.pdb 34 ----------P---------ILHYTIQFNTSF---T-PASWDAAYEKV---P-----NT- 61
1cfb2.pdb 32 ----------EH-NAP-N---FHYYVSWKRDI---P-AAAWENNN-IF---D-----WR- 62
1cto.pdb 36 --------SE---YM--E---QECELRYQPQL--KG--ANWTLVF-HL---P-----SS- 65
1ebpa1.pdb 25 --------------AGVGPG--NYSFSYQLE----D--EPWKLCR-LHQAPTARGAV--- 58
1ebpa2.pdb 30 --------TP-M-TS--H---IRYEVDVSAGN--GA--GSVQRVE-I----L-----EG- 59
1fnf1.pdb 29 --------P-D------I---TGYRITTTPTN---GQQGNSLEEV-V----H-----AD- 56
1fnf2.pdb 27 --------I-D------L---TNFLVRYSPVK---N-EEDVAELS-I----S-----PS- 53
1fnf3.pdb 27 ----------T------I---TGYRIRHHPEH---F-SGRPREDR-V----P-----HS- 52
1fnf4.pdb 28 ----------T------V---RYYRITYGETG---G-NSPVQEFT-V----P-----GS- 53
1ten.pdb 27 ----------E------I---DGIELTYGIKD---V-PGDRTTID-L----T-----ED- 52
3hhrb1.pdb 24 --------------------HGPIQLFYTRRNEW-T--QEWKECP-D----------YVS 49
3hhrb2.pdb 33 --------AD-IQKGWMV---LEYELQYKEVN---E--TKWKMMD-PI----------L- 63
1boy1.pdb 52 --DTECDLTDEIV-KD--VKQTYLARVFSYP-AGNV--EST---GSAGEP-LYE-NSPEF 98
1boy2.pdb 66 --TNEFLI----D-VD--KGENYCFSVQAVI-P---S-RTV---N----R-KST-DSPVE 102
1cfb1.pdb 62 --DSSFVVQ-----MS--PWANYTFRVIAFN-K-----------I----G--ASPPSAHS 94
1cfb2.pdb 63 --QNNIVIA---D-QP--TFVKYLIKVVAIN-D-----------R----GESNV-AAEEV 97
1cto.pdb 66 --KDQFELC---G-LHQA--PVYTLQMRCIR-SS----L----PG----F--WSPWSPGL 102
1ebpa1.pdb 59 --RFWCSLPT--ADTS--SFVPLELRVTAAS-------------------GA---PRYHR 90
1ebpa2.pdb 60 --RTECVLS---N-LR--GRTRYTFAVRARM-AE---PS--F-GG----F--WSAWSEPV 98
1fnf1.pdb 57 --QSSCTFD---N-LS--PGLEYNVSVYTVK-D-----------D----K--ES-VPISD 89
1fnf2.pdb 54 --DNAVVLT---N-LL--PGTEYVVSVSSVY-E-----------Q----H--ES-TPLRG 86
1fnf3.pdb 53 --RNSITLT---N-LT--PGTEYVVSIVALN-G-----------R----E--ES-PLLIG 85
1fnf4.pdb 54 --KSTATIS---G-LK--PGVDYTITVYAVTGR------G--DSP----A--SS-KPISI 90
1ten.pdb 53 --ENQYSIG---N-LK--PDTEYEVSLISRR-G-----------D----M--SS-NPAKE 85
3hhrb1.pdb 50 AGENSCYFNS--SFTS--IWIPYCIKLTSN--------------------GG---TVDEK 82
3hhrb2.pdb 64 --TTSVPVY---S-LK--VDKEYEVRVRSKQ-RN---------SG----N--YGEFSEVL 99
y
1boy1.pdb 99 TPY---L--ET---- 104
1boy2.pdb 103 CMG---Q----E--- 107
1cfb1.pdb 95 DSCTTQ--------- 100
1cfb2.pdb 98 VGYS-GEDR------ 105
1cto.pdb 103 QLRP-T-------MK 109
1ebpa1.pdb 91 VIHI-NE--V----- 97
1ebpa2.pdb 99 SLLT----------- 102
1fnf1.pdb 90 TIIP-A--------- 94
1fnf2.pdb 87 RQKT-G--------- 91
1fnf3.pdb 86 QQST----------- 89
1fnf4.pdb 91 NYRT----------- 94
1ten.pdb 86 TFTT----------- 89
3hhrb1.pdb 83 CFSV-DE--IV-Q-- 91
3hhrb2.pdb 100 YVTL-P--------- 104
#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue = Acidic,{D,E}
# Magenta = Basic,{K,R} and
# Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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