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# Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 14:21:31 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ghf5.html
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#====================================
# Aligned_structures: 6
# 1: 1a3h.pdb
# 2: 1bqca.pdb
# 3: 1ceo.pdb
# 4: 1ecea.pdb
# 5: 1edg.pdb
# 6: 1egza.pdb
#
# Length: 556
# Identity: 9/556 ( 1.6%) (Calculated as the percentage of conserved columns in the alignment.)
# Similarity: 13/556 ( 2.3%) (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps: 337/556 ( 60.6%) (Calculated as the percentage of columns with atleast one gap.)
#===========================================ALIGNMENT START=========================================
1a3h.pdb 1 ----------SVVEEHGQLSISNGELVNER--------GEQVQLKGMSSHGL-------- 34
1bqca.pdb 1 --------AT-------GLHVKNGRLYEAN--------GQEFIIRGVSHP-H-------- 28
1ceo.pdb 1 MV---------------------------S------------FKAGINLGGWISQYQ--V 19
1ecea.pdb 1 ------AG-------GGYWHTSGREILDAN--------NVPVRIAGINWFGFET--CNY- 36
1edg.pdb 1 --MYDA---S----LIPNLQI--PQKNIPNNDGMNFVK--G-LRLGWNLGNTFDA-F--N 43
1egza.pdb 1 --------------SVEPLSVNGNKIYAGE---------KAKSFAGNSLFWS-------N 30
G
1a3h.pdb 35 ---------QWYG---QFV-NYESMKWLRDDWGINVFRAAMYT--S-SG----------- 67
1bqca.pdb 29 ---------NWYP---Q---HTQAFADIKS-HGANTVRVVLSN--GVRW----------- 59
1ceo.pdb 20 F-----S--KE-HF-DTFI-TEKDIETIAE-AGFDHVRLPFDYPII-E-SD--------- 57
1ecea.pdb 37 -V-------VHGL---WSRDYRSMLDQIK-SLGYNTIRLPYSDDIL-KPG-TMPNSINFY 82
1edg.pdb 44 GTNITNELDYETSWSGIKT-TKQMIDAIKQ-KGFNTVRIPVSWHPH-V-SG--------- 90
1egza.pdb 31 NG-------WGGE---KFY-TADTVASLKKDWKSSIVRAAMGV--Q-ES----------- 65
g R
1a3h.pdb 68 ---------GY--ID-DPSVKEKVKEAVEAAIDLDIYVIIDWHIL-S--------D---- 102
1bqca.pdb 60 ---------SKN-------GPSDVANVISLCKQNRLICMLEVHD---------------- 87
1ceo.pdb 58 ----DNV--GE---Y-KEDGLSYIDRCLEWCKKYNLGLVLDMHHA-P-------G----- 94
1ecea.pdb 83 QMNQDLQ---GL------TSLQVMDKIVAYAGQIGLRIILDRHRP-D--------CSGQS 124
1edg.pdb 91 -------SDYK---I-SDVWMNRVQEVVNYCIDNKMYVILNTHHDVDKVKGYFPS----- 134
1egza.pdb 66 ---------GG-YLQDPAGNKAKVERVVDAAIANDMYAIIGWHS---------------- 99
H
1a3h.pdb 103 N-DPNI-------YKEEAKDFFDEMSELYGDY-PNVI-YEIANEPN-GS----------- 140
1bqca.pdb 88 TTGYGE--QSGASTLDQAVDYWIELKSVLQGEEDYVL-INIGNEPYGND----------- 133
1ceo.pdb 95 S-TLFE--DPN--QQKRFVDIWRFLAKRYINEREHIA-FELLNQVV-EP----------- 136
1ecea.pdb 125 A-LWYT-S---SVSEATWISDLQALAQRYKGN-PTVVGFDLHNEPH-DP----------- 166
1edg.pdb 135 S----QY-MAS--SKKYITSVWAQIAARFANYDEHLI-FEGMNEPR-L-VGHANEWWPEL 184
1egza.pdb 100 H-SAEN-------NRSEAIRFFQEMARKYGNK-PNVI-YEIYNEPL-Q------------ 136
Nep
1a3h.pdb 141 ------DVTWG------NQIKPYAEEVIPIIRNN---DPNNIIIVGTG---------TWS 176
1bqca.pdb 134 S-----ATV--------AAWATDTSAAIQRLRAA---GFEHTLVVDAP---------NWG 168
1ceo.pdb 137 ------D---S------TRWNKLMLECIKAIREI---DSTMWLYIGGN---------NYN 169
1ecea.pdb 167 -------ACWGCGDPSIDWRL-AAERAGNAVLSV---NPNLLIFVEGVQSYNGDSYWWG- 214
1edg.pdb 185 TNSDVVDS--I------NCINQLNQDFVNTVRATGGKNASRYLMCPGY----------VA 226
1egza.pdb 137 -------VSWS------NTIKPYAEAVISAIRAI---DPDNLIIVGTP---------SWS 171
r
1a3h.pdb 177 QD--VHHAAD-NQ--L-A-D--------P-NVMYAFHFYAG--T---------------- 202
1bqca.pdb 169 QDWT-NTMRN-NADQVYASD------PTG-NTVFSIHMYGV-YS---------------- 202
1ceo.pdb 170 S---PDELKN-L---A-D-ID------DD-YIVYNFHFYNP--FFFTHQKAHWSESAMAY 211
1ecea.pdb 215 GN--LQGAGQ-YP--V-V-LN----V--PNRLVYSAHDYATS-V---------------- 244
1edg.pdb 227 S---PDGATNDYF--R-M-PNDISGN-NN-KIIVSVHAYCP--WNFAGLA-MA-----DG 269
1egza.pdb 172 QN--VDEASR-DP--I-N-A--------K-NIAYTLHFYAG--T---------------- 197
H Y
1a3h.pdb 203 -------------------------------------------H----------GQNLR- 208
1bqca.pdb 203 -------------------------------------------Q----------ASTIT- 208
1ceo.pdb 212 NRTVKYPGQYEGIEEFVKNNPKYSFMMELNNLKL--NKE----L----------LRKDL- 254
1ecea.pdb 245 -------------------------------------------YPQTWFSDPTFPNNMPG 261
1edg.pdb 270 -GTNAWN---------------------------IND-SKDQSE----------VTWFM- 289
1egza.pdb 198 -------------------------------------------H----------GESLR- 203
1a3h.pdb 209 ---DQVDY-AL-D-QGAAIFVSEWGT-S-AATGDG--GVFLDEAQVWIDFMD------ER 252
1bqca.pdb 209 ---SYLEH-FV-N-AGLPLIIGEFGH-DHSD---G--NP---DEDTIMAEAE------RL 247
1ceo.pdb 255 ---KPAIEFRE-K-KKCKLYCGEFGVIA-----IADLESRIKWHEDYISLLE------EY 298
1ecea.pdb 262 IWNKNWGY-LFNQNI-APVWLGEFGTTL-----QS--TTDQTWLKTLVQYLRPTAQYG-A 311
1edg.pdb 290 ---DNIYNKYT-S-RGIPVIIGECGAVD-----KNNLKTRVEYMSYYVAQAK------AR 333
1egza.pdb 204 ---NKARQ-AL-N-NGIALFVTEWGT-V-NADGNG--GVNQTETDAWVTFMR------DN 247
E G
1a3h.pdb 253 -NLSWANWS---LT-HK-D---ES-SAALM-PG-ANPTGGWTEA-EL--SPSGTFVR-E- 295
1bqca.pdb 248 -KLGYIGWS---WS-GN-GGGVEY-LDMVYNFD-G---------DNL--SPWGERIFYGP 288
1ceo.pdb 299 -DIGGAVWN---YK-KM-D------FEIYN-ED-R---------K-PVSQELVNILA-R- 332
1ecea.pdb 312 DSFQWTFWS---WN-PD-S---GDTGGILK-DD-W---------QTV-DTVKDGYLA-P- 349
1edg.pdb 334 -GILCILWDNNNFSGTGEL------FGFFD-RRSC---------Q-FKFPEIIDGMV-K- 373
1egza.pdb 248 -NISNANWA---LN-DK-N---EG-ASTYY-PD-S---------KNL--TESGKKVK-S- 282
W
1a3h.pdb 296 -KIRE-S--------- 300
1bqca.pdb 289 NGIAS-TAKEA-VIFG 302
1ceo.pdb ----------------
1ecea.pdb 350 -IK-SS-IFDP-V--- 358
1edg.pdb 374 -YAFG----LIN---- 380
1egza.pdb 283 -IIQS-WPYKA----- 291
#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue = Acidic,{D,E}
# Magenta = Basic,{K,R} and
# Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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