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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 07:13:28 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/glnasn.html
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#====================================
# Aligned_structures: 4
#   1: 1agx.pdb
#   2: 1wsaa.pdb
#   3: 3ecaa.pdb
#   4: 3pga1.pdb
#
# Length:        350
# Identity:       95/350 ( 27.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    162/350 ( 46.3%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           42/350 ( 12.0%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1agx.pdb                1  -KNNVVIVATGGTIAGAGASSTNS--ATY--SAAK----------V--PVDALIKAVPQV   43
1wsaa.pdb               1  -KPQVTILATG-------------GTIAGYS-------------AGAVTVDKLLAAVPAI   33
3ecaa.pdb               1  -LPNITILATGGTIAGGGDSAT-K--SNY--TVGK----------V--GVENLVNAVPQL   42
3pga1.pdb               1  KLANVVILATG-------------GTIAG--AGASAANSATYQAAK-VGVDKLIAGVPEL   44
                              nv IlATG                                      Vd L  aVP  

1agx.pdb               44  NDLANITGIQALQVASESITDKELLSLARQVNDLVKKPSVNGVVITHGTDTMEETAFFLN  103
1wsaa.pdb              34  NDLATIKGEQISSIGSQEMTGKVWLKLAKRVNELLAQKETEAVIITHGTDTMEETAFFLN   93
3ecaa.pdb              43  KDIANVKGEQVVNIGSQDMNDNVWLTLAKKINTDC-D-KTDGFVITHGTDTMEETAYFLD  100
3pga1.pdb              45  ADLANVRGEQVMQIASESITNDDLLKLGKRVAELADSNDVDGIVITHGTDTLEETAYFLD  104
                            DlAn  GeQ   i S   t    L Lak vn l       g vITHGTDTmEETA FL 

1agx.pdb              104  LVVHTDKPIVLVGSMRPSTALSADGPLNLYSAVALASSNEAKNKGVMVLMNDSIFAARDV  163
1wsaa.pdb              94  LTVKSQKPVVLVGAMRPGSSMSADGPMNLYNAVNVAINKASTNKGVVIVMNDEIHAAREA  153
3ecaa.pdb             101  LTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAADKASANRGVLVVMNDTVLDGRDV  160
3pga1.pdb             105  LTLNTDKPIVVVGSMRPGTAMSADGMLNLYNAVAVASNKDSRGKGVLVTMNDEIQSGRDV  164
                           Ltv  dKP V VG MRP t mSADGp NLYnAV  A  k s nkGV v MND i   Rdv

1agx.pdb              164  TKGINIHTHAFVSQ-W-GALGTLVEGKPYWFRSSVKKHTNNSEFNIEKIQGDALPGVQIV  221
1wsaa.pdb             154  TKLNTTAVNAFASP-NTGKIGTVYYGKVEYFTQSVRPHTLASEFDISKIEE--LPRVDIL  210
3ecaa.pdb             161  TKTNTTDVATFKSVNY-GPLGYIHNGKIDYQRTPARKHTSDTPFDVSKLNE--LPKVGIV  217
3pga1.pdb             165  SKSINIKTEAFKSA-W-GPLGMVVEGKSYWFRLPAKRHTVNSEFDIKQISS--LPQVDIA  220
                           tK       aF S    G lG    GK   fr     HT  seFdi ki    LP V I 

1agx.pdb              222  YGSDNMMPDAYQAFAKAGVKAIIHAGTGNGSMANYLVPEVRKLHDEQGLQIVRSSRVAQG  281
1wsaa.pdb             211  YAHPDDTDVLVNAALQAGAKGIIHAGMGNGNPFPLTQNALEKAAK-SGVVVARSSRVGSG  269
3ecaa.pdb             218  YNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVFDTLATAAKT-GTAVVRSSRVPTG  276
3pga1.pdb             221  YSYGNVTDTAYKALAQNGAKALIHAGTGNGSVSSRLTPALQTLRKTGTQIIRSSHVNQGG  280
                           Y   n  d    A   aG k iihAG GNG         l    k  g    rSsrv  G

1agx.pdb              282  FVLRNAEQPDDKYGWIAAHDLNPQKARLLMALALTKTNDAKEIQNMFWNY  331
1wsaa.pdb             270  STTQEAEVDDKKLGFVATESLNPQKARVLLMLALTKTSDREAIQKIFSTY  319
3ecaa.pdb             277  ATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQTKDPQQIQQIFNQY  326
3pga1.pdb             281  FVLRNAEQPDDKNDWVVAHDLNPEKARILVELAMVKTQDSKELQRIFWEY  330
                                AE  D K g va   LNPqKAR L  LAltkT D   iQ iF  Y


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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