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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 10:24:13 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/hormone_rec.html
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#====================================
# Aligned_structures: 5
#   1: 1a28a.pdb
#   2: 1lbd.pdb
#   3: 1prga.pdb
#   4: 2lbd.pdb
#   5: 3erta.pdb
#
# Length:        340
# Identity:        9/340 (  2.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     23/340 (  6.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          151/340 ( 44.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a28a.pdb               1  --QLI-----PP--LINLLMSIE----PD-VI---------------------YAGH---   22
1lbd.pdb                1  --------SANEDMPVERILEAELAVEPK-TETY------------VEANMGL-NPS---   35
1prga.pdb               1  -----ESADLRA--LAKHLYDSYIKSFPLTKAKARAILTGKTTDKSP------FVIYDMN   47
2lbd.pdb                1  -----LSPQLEE--LITKVSKAHQETFPS-LCQL------------G------KYTTN--   32
3erta.pdb               1  LALSL---TADQ--MVSALLDAE----PP-IL---------------------YSEY---   26
                                                      P                                

1a28a.pdb              23  -------------DNTK-----PD-TSS--SLLTSLNQLGERQLLSVVKWSKSLPGFRNL   61
1lbd.pdb               36  -------------SPND---------PV--T---NICQAADKQLFTLVEWAKRIPHFSEL   68
1prga.pdb              48  SLMMGEDKIKFKHITPLQE--QSKEVAI--RIFQGCQFRSVEAVQEITEYAKSIPGFVNL  103
2lbd.pdb               33  -SSAD--------------HRVQL--DL--GLWDKFSELATKCIIKIVEFAKRLPGFTGL   73
3erta.pdb              27  -------------DPTR-----PF-S--EASMMGLLTNLADRELVHMINWAKRVPGFVDL   65
                                                                             aK  PgF  L

1a28a.pdb              62  HIDDQITLIQYSWMSLMVFGLGWRSY-KHVSGQMLYFAP-DLILNEQRMK-ES---SFYS  115
1lbd.pdb               69  PLDDQVILLRAGWNELLIASFSHRSI-A-V-KDGILLAT-GLHVHRNSAHSA-G---VGA  120
1prga.pdb             104  DLNDQVTLLKYGVHEIIYTMLASLMN-----KDGVLISEGQGFMTREFLKSL-RKPFG-D  156
2lbd.pdb               74  SIADQITLLKAACLDILMLRICTRYTPE---QDTMTFSD-GLTLNRTQMHNA-G---FGP  125
3erta.pdb              66  TLHDQVHLLECAWLEILMIGLVWRSM-E-H-PGKLLFAP-NLLLDRNQGKCV-E--GMVE  118
                              DQ  Ll              r                 l   r              

1a28a.pdb             116  LCLTMWQIPQEFV-KLQVSQEEFLCMKVLLLLNT-IP-LEGLR------------SQTQF  160
1lbd.pdb              121  IFDRVLTELVSKMRDMQMDKTELGCLRAIVLFN--PDS-KGLS------------NPAEV  165
1prga.pdb             157  FMEPKFEFAVKFN-ALELDDSDLAIFIAVIILS--GDR-PGLL------------NVKPI  200
2lbd.pdb              126  LTDLVFAFAGQLL-PLEMDDTETGLLSAICLIC--GDR-MDLE------------EPEKV  169
3erta.pdb             119  IFDMLLATSSRFR-MMNLQGEEFVCLKSIILLNSGV-------YTFLSSTLKSLEEKDHI  170
                                                e        l                             

1a28a.pdb             161  EEMRSSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQLHLYC--LNTF---I  215
1lbd.pdb              166  EALREKVYASLEAYCKHKYPEQP---GRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTP  222
1prga.pdb             201  EDIQDNLLQALELQLKLNHPESS---QLFAKLLQKMTDLRQIVTEHVQLL--QVIK---K  252
2lbd.pdb              170  DKLQEPLLEALRLYARRRRPSQP---YMFPRMLMKITDLRGISTKGAERA--ITLK---M  221
3erta.pdb             171  HRVLDKITDTLIHLMAKAGLTLQQQHQRLAQLLLILSHIRHMSNKGMEHL--YSMK----  224
                                     L                 f  ll     lr                    

1a28a.pdb             216  QSRALSVEF--PEMMSEVIAAQLPKILAGMVKPLL-FHK-  251
1lbd.pdb              223  IDT-------FLMEMLEA-P------------HQMT----  238
1prga.pdb             253  TET--DMSL--HPLLQEIYKD------------------L  270
2lbd.pdb              222  EIP--GPMP--P-LIREMLEN------------------P  238
3erta.pdb             225  --C-KNVVPLYDLLLEMLDA-------------HR-LHA-  246
                                           e                       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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