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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 10:35:30 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/icd.html
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#====================================
# Aligned_structures: 5
#   1: 1a05a.pdb
#   2: 1cnza.pdb
#   3: 1ipd.pdb
#   4: 2ayqa.pdb
#   5: 3icd.pdb
#
# Length:        448
# Identity:       51/448 ( 11.4%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    131/448 ( 29.2%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          123/448 ( 27.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a05a.pdb               1  -------------------------MKKIAIFAGDGIGPEIVAAARQVLDAVDQAAH---   32
1cnza.pdb               1  MS----------------------KNYHIAVLPGDGIGPEVMAQALKVMDAVRSRFD---   35
1ipd.pdb                1  --------------------------MKVAVLPGDGIGPEVTEAALKVLRALDEAEG---   31
2ayqa.pdb               1  ------------------------MKMKLAVLPGDGIGPEVMDAAIRVLKTVLDNDG---   33
3icd.pdb                1  --SKVVVPAQGKKITLQNGKLNVPENPIIPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGE   58
                                                        a   GDGIGpev  aa  V  a         

1a05a.pdb              33  LGLRCTEGLVGGAALDASD--DPLPAASLQLAMAADAVILGAVG--GPRWDAYPPAKRPE   88
1cnza.pdb              36  MRITTSHYDVGGIAIDNHG--HPLPKATVEGCEQADAILFGSVG--GPKWENLPPESQPE   91
1ipd.pdb               32  LGLAYEVFPFGGAAIDAFG--EPFPEPTRKGVEEAEAVLLGSVG--GPKWDGLPRKISPE   87
2ayqa.pdb              34  HEAVFENALIGGAAIDEAG--TPLPEETLDICRRSDAILLGAVG--GPKWDHNPASLRPE   89
3icd.pdb               59  RKISWMEIYTGEKSTQVYGQDVWLPAETLDLIREYRVAIKGPLTTPVGGG----------  108
                                     Gg a d  g   plP  t        a   G vg  gp w          

1a05a.pdb              89  --QGLLRLRKGLD-LYANLRPAQIFPQLLDASPLRPELVR-DVDILVVRELTGDIYFGQP  144
1cnza.pdb              92  --RGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQP  149
1ipd.pdb               88  --TGLLSLRKSQD-LFANLRPAKVFPGLERLSPLKEEIAR-GVDVLIVRELTGGIYFGEP  143
2ayqa.pdb              90  --KGLLGLRKEMG-LFANLRPVKAYATLLNASPLKRERVE-NVDLVIVRELTGGLYFGRP  145
3icd.pdb              109  IRSLNVALRQELD-LYICLRPVRYYQGT--PSPVK--HPE-LTDMVIFRENSEDIYAG-I  161
                              g l lr     L  nLRP      l   sPl         D   vREltg iYfG p

1a05a.pdb             145  RGLEVID--G-----------------------KRRGFNTMVYDEDEIRRIAHVAFRAAQ  179
1cnza.pdb             150  KGREG--SGQ-----------------------YEKAFDTEVYHRFEIERIARIAFESAR  184
1ipd.pdb              144  RGMSE-----------------------------AEAWNTERYSKPEVERVARVAFEAAR  174
2ayqa.pdb             146  SERRG--P-G-----------------------ENEVVDTLAYTREEIERIIEKAFQLAQ  179
3icd.pdb              162  E-WKA--D--SADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAI  216
                                                                  t  y   e  R    Af  A 

1a05a.pdb             180  GR-RKQLCSVDKANVL-ETTRLWREVVTEVARDYP----------------------DVR  215
1cnza.pdb             185  KR-RRKVTSIDKANVL-QSSILWREIVNDVAKTYP----------------------DVE  220
1ipd.pdb              175  KR-RKHVVSVDKANVL-EVGEFWRKTVEEVGRGYP----------------------DVA  210
2ayqa.pdb             180  IR-RKKLASVDKANVL-ESSRMWREIAEETAKKYP----------------------DVE  215
3icd.pdb              217  ANDRDSVTLVHKGNIMKFTEGAFKDWGYQLARE--EFGGELIDGGPWLKVKNPNTGKEIV  274
                            r R    svdKaNvl      wr      a                          dv 

1a05a.pdb             216  LSHMYVDNAAMQLIRAPAQFDVLLTGNMFGDILSDEASQLTGSIGMLPSASLGEG-RA-M  273
1cnza.pdb             221  LAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQ-GFGL  279
1ipd.pdb              211  LEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRG-TP-V  268
2ayqa.pdb             216  LSHMLVDSTSMQLIANPGQFDVIVTENMFGDILSDEASVITGSLGMLPSASLRSDRFG-M  274
3icd.pdb              275  IKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDE-CA-L  332
                           l h   D   mql   P  fDV    N fGDilSD      Gs G lPsAsl        

1a05a.pdb             274  YEPIHGSAPDIAGQDKANPLATILSVAMMLRHSLNAEPWAQRVEAAVQRVLDQGLRTADI  333
1cnza.pdb             280  YEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDANDAATAIEQAINRALEEGVRTGDL  339
1ipd.pdb              269  FEPVHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLET-PPPDL  327
2ayqa.pdb             275  YEPVHGSAPDIAGQGKANPLGTVLSAALMLRYSFGLEKEAAAIEKAVDDVLQDGYCTGDL  334
3icd.pdb              333  FEATHGTAPKYAGQDKVNPGSIILSAEMMLRH-MGWTEAADLIVKGMEGAINAKTVTYDF  391
                            Ep hGsAPdiAG   aNP   iLS a mLr        A   e a    l     t D 

1a05a.pdb             334  A--APGTPVIGTKAMGAAVVNALNL--K  357
1cnza.pdb             340  A--R-GAAAVSTDEMGDIIARYVAEGV-  363
1ipd.pdb              328  ------GGSAGTEAFTATVLRHLA----  345
2ayqa.pdb             335  Q--VANGKVVSTIELTDRLIEKLN----  356
3icd.pdb              392  ERLMDGAKLLKCSEFGDAIIENM-----  414
                                      t                


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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