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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:43:18 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/il10.html
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#====================================
# Aligned_structures: 2
#   1: 1vlk.pdb
#   2: 2ilk.pdb
#
# Length:        160
# Identity:      128/160 ( 80.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    128/160 ( 80.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           23/160 ( 14.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1vlk.pdb                1  ----------CDNFPQMLRDLRDAFSRVKTFFQTKDEV-----DNLLLKESLLEDFKGYL   45
2ilk.pdb                1  TQSENSCTHFPGNLPNMLRDLRDAFSRVKTFFQ-----MKDQLDNLLLKESLLEDFKGYL   55
                                       N P MLRDLRDAFSRVKTFFQ          DNLLLKESLLEDFKGYL

1vlk.pdb               46  GCQALSEMIQFYLEEVMPQAENQDPEAKDHVNSLGENLKTLRLRLRRCHRFLPCENKSKA  105
2ilk.pdb               56  GCQALSEMIQFYLEEVMPQAENQDPDIKAHVNSLGENLKTLRLRLRRCHRFLPCENKSKA  115
                           GCQALSEMIQFYLEEVMPQAENQDP  K HVNSLGENLKTLRLRLRRCHRFLPCENKSKA

1vlk.pdb              106  VEQIKNAFNKLQEKGIYKAMSEFDIFINYIEAYMTIK---  142
2ilk.pdb              116  VEQVKNAFNKLQEKGIYKAMSEFDIFINYIEAYMTMKIRN  155
                           VEQ KNAFNKLQEKGIYKAMSEFDIFINYIEAYMT K   


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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