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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 20:52:06 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ku.html
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#====================================
# Aligned_structures: 2
#   1: 1jeya.pdb
#   2: 1jeyb.pdb
#
# Length:        586
# Identity:       74/586 ( 12.6%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     74/586 ( 12.6%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          149/586 ( 25.4%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1jeya.pdb               1  GRDSLIFLVDASKAMFESQSE-DELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEK   59
1jeyb.pdb               1  NKAAVVLCMDVGFTMSNS--IPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDG   58
                                    D    M  S        PF      I             D  A V  GT  

1jeya.pdb              60  DKNSVN----FKNIYVLQELDNPGAKRILELDQFKGQQGQKRFQD--MMGHGSDYSLSEV  113
1jeyb.pdb              59  TDNPLSGGDQYQNITVHRHLMLPDFDLLEDIES------------KIQP-GSQQADFLDA  105
                             N         NI V   L  P                                     

1jeya.pdb             114  LWVCANLFSDV-Q-FKMSHKRIMLFTNEDNPHGNDSA----KASRARTKAGDLRDTGIFL  167
1jeyb.pdb             106  LIVSMDVIQHETIGKKFEKRHIEIFTDL---------SSRFSKSQLDIIIHSLKKCDISL  156
                           L V            K     I  FT                 S        L    I L

1jeya.pdb             168  DLMHLKKPGG-----FDIS--------------------LFYRDII-SVHFEESS----K  197
1jeyb.pdb             157  Q-FFLPF---SLGGPFRL-GGHGPSFPLKGITEQQKEGLEIVKMVMIS-------LEGED  204
                               L          F                               S            

1jeya.pdb             198  LE----DLLRKVRAKETRKRA-----------LSRLKLKLNKDIVISVGIYNLVQKALKP  242
1jeyb.pdb             205  GLDEIYSFSESLRKL------CVFKKIERHSIHWPCRLTIGSNLSIRIAAYKSILQERVK  258
                                       R                        L       I    Y         

1jeya.pdb             243  -PPIKLYRETNEPV-KTKTRTFN-TST-GGLLLPSDTKRSQIYGSRQIILEKEETEE-LK  297
1jeyb.pdb             259  KTWTVVDAKTLKKEDIQKETVYCLNDDDETEVLKEDIIQGFRYGSDIVPFSKVDEEQMKY  318
                                    T       K              L  D      YGS      K   E    

1jeya.pdb             298  RFDDPGLMLMGFKPLVLLKKHHYLR-PSLFVYPEESLVIGSSTLFSALLIKCLEKEVAAL  356
1jeyb.pdb             319  KSEGKCFSVLGFCKSSQVQRRFFMGNQVLKVFAA-RDDEAAAVALSSLIHALDDLDMVAI  377
                                     GF                L V              S L          A 

1jeya.pdb             357  CRYTPRRNIPPYFVALVPQEEELDDQKIQVT-PPGFQLVFLPFADDKRKMPFTEK-----  410
1jeyb.pdb             378  VRYAYDKRANPQVGVAFPHIK-H--------NYECLVYVQLPFMEDLRQYMFSSLKNSKK  428
                            RY       P      P                    V LPF  D R   F        

1jeya.pdb             411  IMATPEQVGKMKAIVEKLRFT------------YRSDSFENPVLQQHFRNLEALAL-D-L  456
1jeyb.pdb             429  YAPTEAQLNAVDALIDSMSLAKKDEKTDTLEDLFPTTKIPNPRFQRLFQCLLHRALHPRE  488
                              T  Q     A                           NP  Q  F  L   AL    

1jeya.pdb             457  MEPEQAV----DLTLPKVEAMNKRLGSLVDEFKELVYPPDY-----  493
1jeyb.pdb             489  -PLPPIQQHIWNMLNPP-AEVTTKSQIPLSKIKTLFPL-I-EAKKK  530
                                          P                K L           


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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