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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 02:45:47 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/lamb.html
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#====================================
# Aligned_structures: 3
#   1: 1a0tp.pdb
#   2: 1af6a.pdb
#   3: 2mpra.pdb
#
# Length:        499
# Identity:       76/499 ( 15.2%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    299/499 ( 59.9%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          161/499 ( 32.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a0tp.pdb               1  SGFEFHGYARSGVIMNDSGASTKSGA-YITPAGETGGAIGRLGNQADTYVEMNLEHKQTL   59
1af6a.pdb               1  --VDFHGYARSGIGWTGSGGEQQCFQTT-----GA-QSKYRLGNECETYAELKLGQEVWK   52
2mpra.pdb               1  --VDFHGYARSGIGWTGSGGEQQCFQAT-----GA-QSKYRLGNECETYAELKLGQEVWK   52
                             vdFHGYARSGigwtgSGgeqqcfq t     ga qskyRLGNeceTYaElkLgqevwk

1a0tp.pdb              60  DNGATTRFKVMVADGQTSYNDWTASTSDLNVRQAFVELGNLPTFAGPFKGSTLWAGKRFD  119
1af6a.pdb              53  EGDKSFYFDTNVAYSVAQQNDWEA-T-DPAFREANVQGKNL--IE-WLPGSTIWAGKRFY  107
2mpra.pdb              53  EGDKSFYFDTNVAYSVNQQNDWES-T-DPAFREANVQGKNL--IE-WLPGSTIWAGKRFY  107
                           egdksfyFdtnVAysv qqNDWea T DpafReAnVqgkNL  ie wlpGSTiWAGKRFy

1a0tp.pdb             120  RDNFDIHWIDSDVVFLAGTGGGIYDVKWND------------------------------  149
1af6a.pdb             108  -QRHDVHMIDFYYWDISGPGAGLENIDVG-FGKLSLAATRSSEAGGSSSFASNNIYDYTN  165
2mpra.pdb             108  -QRHDVHMIDFYYWDISGPGAGIENIDLG-FGKLSLAATRSTEAGGSYTFSSQNIYDEVK  165
                            qrhDvHmIDfyywdisGpGaGienid g                               

1a0tp.pdb             150  --GLRSNFSLYGRNFGDIDDSSNSVQNYILTMNHFA-----------G-PLQMMVSGLRA  195
1af6a.pdb             166  ETANDVFDVRLA-Q--MEI-NPGGTLELGVDYGRANLRDNYRLVDGASKDGWLFTAEHTQ  221
2mpra.pdb             166  DTANDVFDVRLA-G--LQT-NPDGVLELGVDYGRANTTDGYKLADGASKDGWMFTAEHTQ  221
                             andvfdvrla        np gvlelgvdygran           s dgwmftaehtq

1a0tp.pdb             196  K-DNDERKDSNGNLAKGDAANTGVHALLGLHNDSFYGLRD------GSSKTALLYGHG--  246
1af6a.pdb             222  SVL-----------------KGFNKFVVQYATD-------SMTSQGKGLSQGSGVAFDN-  256
2mpra.pdb             222  SML-----------------KGYNKFVVQYATD-------AMTTQGKGQARGSDGSSSFT  257
                           s l                 kg nkfvvqyatD             kg   gs       

1a0tp.pdb             247  ----LGAEVKGIGSDGALR------PGADTWRIASYGTTPLSENWSVAPAMLAQRSKDRY  296
1af6a.pdb             257  ----EK-------------FAYNINNNGHMLRILDHGAISMGDNWDMMYVGMYQDINW-D  298
2mpra.pdb             258  EKINYA-------------NK-VINNNGNMWRILDHGAISLGDKWDLMYVGMYQNIDW-D  302
                                                    nng mwRIldhGaislgdnWd myvgmyQ i w d

1a0tp.pdb             297  ADGDSYQWATFNLRLIQAINQNFALAYEGSYQYMDLKPEGYNDRQA--VNGSFYKLTFAP  354
1af6a.pdb             299  -NDNGTKWWTVGIRPMYKWTPIMSTVMEIGYDNVESQR--------TGDKNNQYKITLAQ  349
2mpra.pdb             303  -NNLGTEWWTVGVRPMYKWTPIMSTLLEVGYDNVKSQQ--------TGDRNNQYKITLAQ  353
                            n  gt WwTvg Rpmykwtpimst  E gYdnv sq           d nnqYKiTlAq

1a0tp.pdb             355  TFKVGSIGDFFSRPEIRFYTSWMDWSKKL----------N---NYASDD--ALGSDGF--  397
1af6a.pdb             350  QWQ-AGD-SIWSRPAIRVFATYAKWD---EKWGYDYTGNA-DNNANFGKAVPADFNGGS-  402
2mpra.pdb             354  QWQ-AGD-SIWSRPAIRIFATYAKWD---EKWGYIKDGDNI-----SRYAAATNSG-IST  402
                           qwq agd siwSRPaIR fatyakWd             n      s    a  s     

1a0tp.pdb             398  --NS-GGEWSFGVQMETWF  413
1af6a.pdb             403  FGRGDSDEWTFGAQMEIWW  421
2mpra.pdb             403  NSRGDSDEWTFGAQMEIWW  421
                             rg sdEWtFGaQMEiWw


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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