################################################################################################
# Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 23:42:46 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/ltn.html
################################################################################################
#====================================
# Aligned_structures: 12
# 1: 1avba.pdb
# 2: 1lec.pdb
# 3: 1len.pdb
# 4: 1lgc.pdb
# 5: 1loe.pdb
# 6: 1lte.pdb
# 7: 1lu1.pdb
# 8: 1sbf.pdb
# 9: 1wbla.pdb
# 10: 2ltn.pdb
# 11: 2pela.pdb
# 12: 5cna.pdb
#
# Length: 290
# Identity: 25/290 ( 8.6%) (Calculated as the percentage of conserved columns in the alignment.)
# Similarity: 52/290 ( 17.9%) (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps: 86/290 ( 29.7%) (Calculated as the percentage of columns with atleast one gap.)
#===========================================ALIGNMENT START=========================================
1avba.pdb 1 ----SNDASFNVETFN----K--TNLILQGDATVS-SEGHLLLTNVK---GNEEDSMGRA 46
1lec.pdb 1 -----NTVNFTYPDFWSYSLKNGTEITFLGDATRI-PG-ALQLTKTDANGNPVRSSAGQA 53
1len.pdb 1 ----TETTSFSITKFS--PDQ--QNLIFQGDGYTT-KG-KLTLT-K-----AVKSTVGRA 44
1lgc.pdb 1 ----TETTSFSITKFG--PDQ--PNLIFQGDGYTT-KE-RLTLT-K-----AVRNTVGRA 44
1loe.pdb 1 ----TETTSFSITKFG--PDQ--QNLIFQGDGYTT-KE-RLTLT-K-----AVRNTVGRA 44
1lte.pdb 1 ----VETISFSFSEFE--PGN--DNLTLQGASLITQSG-VLQLTKINQNGMPAWDSTGRT 51
1lu1.pdb 1 ----ANIQSFSFKNFN----S--PSFILQGDATVS-SG-KLQLTKVKENGIPTPSSLGRA 48
1sbf.pdb 1 ----AETVSFSWNKFV--PKQ--PNMILQGDAIVTSSG-KLQLNKVDENGTPKPSSLGRA 51
1wbla.pdb 1 -----KTISFNFNQFH--QNE--EQLKLQRDARISSNS-VLELTKVVN-GVPTWNSTGRA 49
2ltn.pdb 1 ----TETTSFLITKFS--PDQ--QNLIFQGDGYTT-KE-KLTLT-K-----AVKNTVGRA 44
2pela.pdb 1 ----AETVSFNFNSFS--EGN--PAINFQGDVTVLSNG-NIQLTNL-----NKVNSVGRV 46
5cna.pdb 1 STHETNALHFMFNQFS--KDQ--KDLILQGDATTGTDG-NLELTRVSSNGSPQGSSVGRA 55
F F qgd l Lt Gr
1avba.pdb 47 FYSAPIQINDRTIDNLASFSTNFTFRINAKNI-ENSAYGLAFALVPVGSRPK--L-KGRY 102
1lec.pdb 54 SYSEPVFLWDSTGK-AASFYTSFTFLLKNYG--APTADGLAFFLAPVDSSVK--D-YGGF 107
1len.pdb 45 LYSTPIHIWDRDTGNVANFVTSFTFVIDAPSS-YNVADGFTFFIAPVDTKPQ--T-GGGY 100
1lgc.pdb 45 LYSSPIHIWDSKTGNVANFVTSFTFVIDAPNS-YNVADGFTFFIAPVDTKPQ--T-GGGY 100
1loe.pdb 45 LYSSPIHIWDSKTGNVANFVTSFTFVIDAPNS-YNVADGFTFFIAPVDTKPQ--T-GGGY 100
1lte.pdb 52 LYAKPVHIWDMTTGTVASFETRFSFSIEQPYTRPLPADGLVFFMGPTKSKPA--Q-GYGY 108
1lu1.pdb 49 FYSSPIQIYDKSTGAVASWATSFTVKISAPSK-ASFADGIAFALVPVGSEPR--R-NGGY 104
1sbf.pdb 52 LYSTPIHIWDKETGSVASFAASFNFTFYAPDT-KRLADGLAFFLAPIDTKPQ--T-HAGY 107
1wbla.pdb 50 LYAKPVQVWDSTTGNVASFETRFSFSIRQPFPRPHPADGLVFFIAPPNTQTG--E-GGGY 106
2ltn.pdb 45 LYSSPIHIWDRETGNVANFVTSFTFVINAPNS-YNVADGFTFFIAPVDTKPQ--T-GGGY 100
2pela.pdb 47 LYAMPVRIWSSATGNVASFLTSFSFEMKDIK-DYDPADGIIFFIAPEDTQIPAGSIGGGT 105
5cna.pdb 56 LFYAPVHIWESSAV-VASFEATFTFLIKSPD--SHPADGIAFFISNIDSSIPSGS-TGRL 111
y P A f F f AdG F p
1avba.pdb 103 LGLFNT-T-N-Y-DR-DAHTVAVVFDTV-----------SNRIEIDVNSIRPIATESCN- 145
1lec.pdb 108 LGLFRH-E-TAADPS-KNQVVAVEFDTWINKDWNDP--PYPHIGIDVNSIVSVATTRWEN 162
1len.pdb 101 LGVFNS-K-E-Y-DK-TSQTVAVEFDTFYNAA-WDPSNKERHIGIDVNSIKSVNTKSWN- 153
1lgc.pdb 101 LGVFNS-K-D-Y-DK-TSQTVAVEFDTFYNTA-WDPSNGDRHIGIDVNSIKSINTKSWK- 153
1loe.pdb 101 LGVFNS-K-D-Y-DK-TSQTVAVEFDTFYNTA-WDPSNGDRHIGIDVNSIKSINTKSWA- 153
1lte.pdb 109 LGIFNQ-S-K-Q-DN-SYQTLGVEFDTFSNPW-DPP--QVPHIGIDVNSIRSIKTQPFQ- 159
1lu1.pdb 105 LGVFDS-D-V-Y-NN-SAQTVAVEFDTLSNSG-WDPS--MKHIGIDVNSIKSIATVSWD- 155
1sbf.pdb 108 LGLFNENE-S------GDQVVAVEFDTFRNSW-D-P--PNPHIGINVNSIRSIKTTSWD- 155
1wbla.pdb 107 FGIYNP-L-S------PYPFVAVEFDTFRNTW-D-P--QIPHIGIDVNSVISTKTVPFT- 153
2ltn.pdb 101 LGVFNS-A-E-Y-DK-TTQTVAVEFDTFYNAA-WDPSNRDRHIGIDVNSIKSVNTKSWK- 153
2pela.pdb 106 LGVSDT-KG-------AGHFVGVEFDTYSNSEYNDP--PTDHVGIDVNSVDSVKTVPWN- 154
5cna.pdb 112 LGLFPD-A-------NADTIVAVELDTYPNTDIGDP--SYPHIGIDIKSVRSKKTAKWN- 160
lG v VefDT higIdvnS s T
1avba.pdb 146 --F-GHNNGEKAEVRITYDSPKNDLRVSLLYPSSEEKCHVSATVPLEKEVEDWVSVGFSA 202
1lec.pdb 163 DDAY--GS-SIATAHITYDARSKILTVLLSYE-HGRDYILSHVVDLAKVLPQKVRIGFSA 218
1len.pdb 154 --L---QNGERANVVIAFNAATNVLTVTLTYP-NVTSYTLNEVVPLKDVVPEWVRIGFSA 207
1lgc.pdb 154 --L---QNGKEANVVIAFNGATNVLTVSLTYP-NETSYTLNEVVPLKEFVPEWVRIGFSA 207
1loe.pdb 154 --L---QNGKEANVVIAFNAATNVLTVSLTYP---TSYTLNEVVPLKEFVPEWVRIGFSA 205
1lte.pdb 160 --L---DNGQVANVVIKYDASSKLLHAVLVYPSSGAIYTIAEIVDVKQVLPEWVDVGLSG 214
1lu1.pdb 156 --L---ANGENAEILITYNAATSLLVASLVHPSRRTSYILSERVDITNELPEYVSVGFSA 210
1sbf.pdb 156 --L---ANNKVAKVLITYDASTSLLVASLVYPSQRTSNILSDVVDLKTSLPEWVRIGFSA 210
1wbla.pdb 154 --L---DNGGIANVVIKYDASTKILHVVLVFPSLGTIYTIADIVDLKQVLPESVNVGFSA 208
2ltn.pdb 154 --L---QNGEEANVVIAFNAATNVLTVSLTYP-NVTSYTLSDVVSLKDVVPEWVRIGFSA 207
2pela.pdb 155 --S---VSGAVVKVTVIYDSSTKTLSVAVTND-NGDITTIAQVVDLKAKLPERVKFGFSA 208
5cna.pdb 161 --M---QNGKVGTAHIIYNSVDKRLSAVVSYP-NADSATVSYDVDLDNVLPEWVRVGLSA 214
i L V p V G Sa
1avba.pdb 203 TSGSK----KETTETHNVLSWSFSSNFI---------------------- 226
1lec.pdb 219 GVG-Y------D-EVTYILSWHFFSTLDGTNK------------------ 242
1len.pdb 208 TTG-A------EFAAQEVHSWSFNSQLG---------------------- 228
1lgc.pdb 208 TTG-A------EFAAHEVLSWYFNSELSV---TS---------------- 231
1loe.pdb 206 TTG-A------EFAAHEVLSWYFHSELA---------------------- 226
1lte.pdb 215 ATGAQ----RDAAETHDVYSWSFQASLPE--------------------- 239
1lu1.pdb 211 TTGLS----EGYIETHDVLSWSFASKLPD---DSTAEPLDLASYLVRNVL 253
1sbf.pdb 211 ATGLD----IPGESHDVL-SWSFASNLPH--------------------- 234
1wbla.pdb 209 ATGDPSGKQRNATETHDILSWSFSASLPG--------------------- 237
2ltn.pdb 208 TTG-A------EYAAHEVLSWSFHSELS---------------------- 228
2pela.pdb 209 SGS-L-----GGRQIHLIRSWSFTSTLIT---T----------------- 232
5cna.pdb 215 STG-L------YKETNTILSWSFTSKLKS---N----------------- 237
g SW F l
#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue = Acidic,{D,E}
# Magenta = Basic,{K,R} and
# Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################