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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 11:26:28 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/myb_DNA-binding.html
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#====================================
# Aligned_structures: 5
#   1: 1a5j1.pdb
#   2: 1a5j2.pdb
#   3: 1ba5.pdb
#   4: 1msfc1.pdb
#   5: 1msfc2.pdb
#
# Length:         75
# Identity:        9/ 75 ( 12.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     14/ 75 ( 18.7%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           31/ 75 ( 41.3%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1a5j1.pdb               1  GIPDLVK-------GPWTKEEDQKVIELVKKYGTKQWTLIAKHLK--GRLGK-QCRERWH   50
1a5j2.pdb               1  ---------EVKK-SSWTEEEDRIIFEAHKVLG-NRWAEIAKLLP--GR-TDNAVKNHWN   46
1ba5.pdb                1  -----R-KR-----QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNR-TSVMLKDRWR   48
1msfc1.pdb              1  MLI---K-------GPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK--GR-IGKQCRERWH   47
1msfc2.pdb              1  -------------KTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLP--GR-TDNAIKNHWN   43
                                           Wt EED          G   W  Iak l   gR         W 

1a5j1.pdb              51  NHL-N----P-----   55
1a5j2.pdb              47  STI--K-RKV--DT-   55
1ba5.pdb               49  TMK--KL--------   53
1msfc1.pdb             48  NHLNP----EVK---   55
1msfc2.pdb             44  STM--R-RK-----V   50
                                          


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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