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# Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sun Jul 24 05:24:50 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/phoslip.html
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#====================================
# Aligned_structures: 18
# 1: 1a2aa.pdb
# 2: 1ae7.pdb
# 3: 1aokb.pdb
# 4: 1bbc.pdb
# 5: 1bp2.pdb
# 6: 1buna.pdb
# 7: 1cl5a.pdb
# 8: 1clpa.pdb
# 9: 1goda.pdb
# 10: 1jiaa.pdb
# 11: 1p2p.pdb
# 12: 1poba.pdb
# 13: 1pp2r.pdb
# 14: 1ppa.pdb
# 15: 1psj.pdb
# 16: 1vapa.pdb
# 17: 1vip.pdb
# 18: 1vpi.pdb
#
# Length: 145
# Identity: 23/145 ( 15.9%) (Calculated as the percentage of conserved columns in the alignment.)
# Similarity: 26/145 ( 17.9%) (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps: 36/145 ( 24.8%) (Calculated as the percentage of columns with atleast one gap.)
#===========================================ALIGNMENT START=========================================
1a2aa.pdb 1 NLLQFNKMIKEET-G-KNAI-PFYAFYGCYCGGGGNGKPKDGTDRCCFVHDCCYGRLV-- 55
1ae7.pdb 1 NLVQFSYLIQCANHGKRP-T-WHYMDYGCYCGAGGSGTPVDELDRCCKIHDDCYDEAG-- 56
1aokb.pdb 1 NLFQFAKMINGKL-G-AFSV-WNYISYGCYCGWGGQGTPKDATDRCCFVHDCCYGRVR-- 55
1bbc.pdb 1 NLVNFHRMIKLTT-GKEA-A-LSYGFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKR 57
1bp2.pdb 1 ALWQFNGMIKCKI-PSSE-PLLDFNNYGCYCGLGGSGTPVDDLDRCCQTHDNCYKQAK-- 56
1buna.pdb 1 NLINFMEMIRYTIPCEKT-W-GEYADYGCYCGAGGSGRPIDALDRCCYVHDNCYGDAE-- 56
1cl5a.pdb 1 SLLEFGKMILEET-G-KLAI-PSYSSYGCYCGWGGKGTPKDATDRCCFVHDCCYGNLP-- 55
1clpa.pdb 1 SLFELGKMILQET-G-KNPA-KSYGAYGCNCGVLGRGKPKDATDRCCYVHKCCYKKLT-- 55
1goda.pdb 1 SMYQLWKMILQET-G-KNAV-PSYGLYGCNCGVGSRGKPKDATDRCCFVHKCCYKKLT-- 55
1jiaa.pdb 1 HLLQFRKMIKKMT-G-KEPV-VSYAFYGCYCGSGGRGKPKDATDRCCFVHDCCYEKVT-- 55
1p2p.pdb 1 ALWQFRSMIKCAI-PGSH-PLMDFNNYGCYCGLGGSGTPVDELDRCCETHDNCYRDAK-- 56
1poba.pdb 1 NLYQFKNMIQCTV-PSRS-W-WDFADYGCYCGRGGSGTPVDDLDRCCQVHDNCYNEAE-- 55
1pp2r.pdb 1 SLVQFETLIMKIA-G-RSGL-LWYSAYGCYCGWGGHGLPQDATDRCCFVHDCCYGKAT-- 55
1ppa.pdb 1 SVLELGKMILQET-G-KNAI-TSYGSYGCNCGWGHRGQPKDATDRCCFVHKCCYKKLT-- 55
1psj.pdb 1 SLIQFETLIMKVA-K-KSGM-FWYSNYGCYCGWGGQGRPQDATDRCCFVHDCCYGKVT-- 55
1vapa.pdb 1 NLFQFEKLIKKMT-G-KSGM-LWYSAYGCYCGWGGQGRPKDATDRCCFVHDCCYGKVT-- 55
1vip.pdb 1 NLFQFAEMIVKMT-G-KNPL-SSYSDYGCYCGWGGKGKPQDATDRCCFVHDCCYEKVK-- 55
1vpi.pdb 1 NLFQFGDMILQKT-G-KEAV-HSYAIYGCYCGWGGQGRAQDATDRCCFAQDCCYGRVN-- 55
I YGC CG g G p D DRCC h CY
1a2aa.pdb 56 -----N----C---NTKSDIYSYSLKEGYITCG-K-GTNCEEQICECDRVAAECFRRNLD 101
1ae7.pdb 57 K----K----GCFP--KMSAYDYYCGENGPYCRNI-KKKCLRFVCDCDVEAAFCFAKA-- 103
1aokb.pdb 56 -----G----C---NPKLAIYYYSFKKGNIVCG-K-NNGCLRDICECDRVAANCFHQNKN 101
1bbc.pdb 58 -----G----C---GTKFLSYKFSNSGSRITCA-K-QDSCRSQLCECDKAAATCFARNKT 103
1bp2.pdb 57 KLDSCKV-LVD---NPYTNNYSYSCSNNEITCSSE-NNACEAFICNCDRNAAICFSKV-- 109
1buna.pdb 57 KK--HK----C---NPKTQSYSYKLTKRTIICYGAAG-TCARIVCDCDRTAALCFGNS-- 104
1cl5a.pdb 56 -----D----C---NPKSDRYKYKRVNGAIVCE-K-GTSCENRICECDKAAAICFRQNLN 101
1clpa.pdb 56 -----G----C---NPKKDRYSYSWKDKTIVCG-E-NNSCLKELCECDKAVAICLRENLN 101
1goda.pdb 56 -----D----C---SPKTDSYSYSWKDKTIVCG-D-NNPCLQEMCECDKAVAICLRENLD 101
1jiaa.pdb 56 -----G----C---DPKWDDYTYSWKNGTIVCG-G-DDPCKKEVCECDKAAAICFRDNLK 101
1p2p.pdb 57 NLDSCK-FLVD---NPYTESYSYSCSNTEITCNSK-NNACEAFICNCDRNAAICFSKA-- 109
1poba.pdb 56 K---IS---GC---WPYFKTYSYECSQGTLTCKGG-NNACAAAVCDCDRLAAICFAGA-- 103
1pp2r.pdb 56 -----D----C---NPKTVSYTYSEENGEIICG-G-DDPCGTQICECDKAAAICFRDNIP 101
1ppa.pdb 56 -----D----C---NHKTDRYSYSWKNKAIICE-E-KNPCLKEMCECDKAVAICLRENLD 101
1psj.pdb 56 -----G----C---DPKMDVYSFSEENGDIVCG-G-DDPCKKEICECDRAAAICFRDNLT 101
1vapa.pdb 56 -----G----C---NPKMDIYTYSVDNGNIVCG-G-TNPCKKQICECDRAAAICFRDNLK 101
1vip.pdb 56 -----S----C---KPKLSLYSYSFQNGGIVCG-D-NHSCKRAVCECDRVAATCFRDNLN 101
1vpi.pdb 56 -----D----C---NPKTATYTYSFENGDIVCG-D-NDLCLRAVCECDRAAAICLGENVN 101
Y C C C CD A C
1a2aa.pdb 102 TYNNGYMFYRDSKCTETSEEC---- 122
1ae7.pdb 104 PYNNANWNIDTKKR-C------Q-- 119
1aokb.pdb 102 TYNANYKFLSSSRC-RQTGEKC--- 122
1bbc.pdb 104 TYNKKYQYYSNKHC-RGSTPRC--- 124
1bp2.pdb 110 PYNKEHKNLDKKNC----------- 123
1buna.pdb 105 EYIEGHKNIDTARF-C------Q-- 120
1cl5a.pdb 102 TYSKKYMLYPDFLC-KGELKC---- 121
1clpa.pdb 102 TYNKKYRYYLKPLC-KKADAC---- 121
1goda.pdb 102 TYNKNYKIYPKPLC-KKADAC---- 121
1jiaa.pdb 102 TYKKRYMAYPDILC-SSKSEKC--- 122
1p2p.pdb 110 PYNKEHKNLDTKKY-C--------- 124
1poba.pdb 104 PYNDNDYNINLKAR-C--------- 118
1pp2r.pdb 102 SYDNKYWLFPPKDC-REEPEPC--- 122
1ppa.pdb 102 TYNKKYKAYFKLKC-KKPDTC---- 121
1psj.pdb 102 LYNDKKYWAFGAKN-CPQEESE-PC 124
1vapa.pdb 102 TYDSKTYWKYPKKN-CKEESEP-C- 123
1vip.pdb 102 TYDKKYHNYPPSQC-TGTEQC---- 121
1vpi.pdb 102 TYDKNYEYYSISHC-TEESEQC--- 122
Y
#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue = Acidic,{D,E}
# Magenta = Basic,{K,R} and
# Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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