################################################################################################ # Program: MUSTANG-Lite v0.1: A Multiple structural alignment algorithm # Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey # Rundate: Fri Jul 22 22:33:57 2005 # Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/pp-binding.html ################################################################################################ #==================================== # Aligned_structures: 2 # 1: 1acp.pdb # 2: 2af8.pdb # # Length: 99 # Identity: 17/ 99 ( 17.2%) (Calculated as the percentage of conserved columns in the alignment.) # Similarity: 17/ 99 ( 17.2%) (Calculated as the percentage of semi-conserved columns in the alignment) # Gaps: 35/ 99 ( 35.4%) (Calculated as the percentage of columns with atleast one gap.) #===========================================ALIGNMENT START========================================= 1acp.pdb 1 S--------TIEERVKKIIGEQLGVK-------QEEV-TNNASFVEDLGADSLDTVELVM 44 2af8.pdb 1 -MATLLTTDDLRRALVEC--------AGETDGTDLSGDFLDLRFE-DIGYDSLALMETAA 50 F D G DSL E 1acp.pdb 45 ALEEEFDTEIPDE--EAEKITTVQAAIDYINGHQA---- 77 2af8.pdb 51 RLESRYGVSIPDDVAGRV-D-TPRELLDLINGAL-AEAA 86 LE IPD T D ING #=========================================ALIGNMENT END============================================= #LEGEND: # # Colours indicate the chemical nature of the amino acid; # Red = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W} # Blue = Acidic,{D,E} # Magenta = Basic,{K,R} and # Green = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}. # # The "markup row" below each stretch of the multiple alignment is used to mark completely conserved # residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment. # ################################################EOF#################################################