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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 09:21:51 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/rep.html
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#====================================
# Aligned_structures: 4
#   1: 1adr.pdb
#   2: 1lmb3.pdb
#   3: 1r69.pdb
#   4: 2cro.pdb
#
# Length:        101
# Identity:        5/101 (  5.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     20/101 ( 19.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           42/101 ( 41.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1adr.pdb                1  MNT-Q-------LMGERI----RARRKKLKIRQAALGKMVGVSNVAISQWERSETEPNGE   48
1lmb3.pdb               1  -----PLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAY   55
1r69.pdb                1  ------------SISSRV----KSKRIQLGLNQAELAQKVGTTQQSIEQLENGKTKR---   41
2cro.pdb                1  ---MQ-------TLSERL----KKRRIALKMTQTELATKAGVKQQSIQLIEAGVTKR---   43
                                           R        r  L   Q  la k G  q  i   e g t     

1adr.pdb               49  --NLLALSKALQCSPDYLLKGDLSQTNVAY-----------   76
1lmb3.pdb              56  --NAALLAKILKVSVEEFSP-----SIA--REIYEMYEAVS   87
1r69.pdb               42  PRFLPELASALGVSVDWLLNGT-------------------   63
2cro.pdb               44  PRFLFEIAMALNCDPVWLQYGT-------------------   65
                              l  la aL  s   l                       


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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