################################################################################################
# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Sat Jul 23 04:11:55 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/rnh.html
################################################################################################
#====================================
# Aligned_structures: 3
#   1: 1hrha.pdb
#   2: 1ril.pdb
#   3: 1rnh.pdb
#
# Length:        170
# Identity:       20/170 ( 11.8%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     72/170 ( 42.4%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:           62/170 ( 36.5%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1hrha.pdb               1  YQLEKEPIV-GAETFYVDGAANR-ETKLGKAGYVTN---KGRQKVVPLTNTTNQKTELQA   55
1ril.pdb                1  ---------RKRVALFTDGACLGNP-GPGGWAALLRFHAHEKLLSGGEACTTNNRMELKA   50
1rnh.pdb                1  --------L-KQVEIFTDGSCLGNP-GPGGYGAILRYRGREKTFSAGYTRTTNNR-EL-A   48
                                     k v  ftDGaclg p gpGg ga lr    ek  s g t TTNnr EL A

1hrha.pdb              56  IYLALQDS--GLEVNIVTDSQYALGIIQAQPDKS-------------------E-SELVN   93
1ril.pdb               51  AIEGLKALKEPCEVDLYTDSHYLKKAFTE-----GWLEGWRKRGWRTAEGKPVKNRDLWE  105
1rnh.pdb               49  AIVALEALKEHCEVILSTDSQYVRQGITQ------WIHNWKKRGWKTADKKPVKNVDLWQ  102
                           ai aL al   cEV l TDSqY    it                         k  dLw 

1hrha.pdb              94  QIIEQLIKKEKVYLAWVP----GGNEQVDKLVSAGI--------------  125
1ril.pdb              106  ALLLAMAPHRVRFHFVKGHTGHPENERVDREARRQAQSQ--------AKT  147
1rnh.pdb              103  RLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAN-PTLEDTGYQ---  148
                            l  al  h      vkg    peNErvD lara a              


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
################################################EOF#################################################