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# Program: MUSTANG-Lite v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, A. M. Lesk, J. C. Whisstock, and P. J. Stuckey
# Rundate: Fri Jul 22 23:30:09 2005
# Report_file: /mnt/EXTRA_STORAGE/MUSTANG_RESULTS/HOMSTRAD_Datasets/results/thymid_phosphorylase.html
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#====================================
# Aligned_structures: 2
#   1: 1brwa.pdb
#   2: 2tpt.pdb
#
# Length:        440
# Identity:      185/440 ( 42.0%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:    185/440 ( 42.0%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:            7/440 (  1.6%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


1brwa.pdb               1  -MRMVDLIAKKRDGKALTKEEIEWIVRGYTNGDIPDYQMSALAMAIYFRGMTEEETAALT   59
2tpt.pdb                1  LFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAMTIFFHDMTMPERVSLT   60
                                  I KKRDG AL  EEI     G     I   Q  ALAM I F  MT  E   LT

1brwa.pdb              60  MAMVQSGEMLDLS-S-IRGVKVDKHSTGGVGDTTTLVLGPLVASVGVPVAKMSGRGLGHT  117
2tpt.pdb               61  MAMRDSGTVLDWKSLHLNGPIVDKHSTGGVGDVTSLMLGPMVAACGGYIPMISGRGLGHT  120
                           MAM  SG  LD       G  VDKHSTGGVGD T L LGP VA  G      SGRGLGHT

1brwa.pdb             118  GGTIDKLESVPGFHVEISKDEFIRLVNENGIAIIGQTGDLTPADKKLYALRDVTATVNSI  177
2tpt.pdb              121  GGTLDKLESIPGFDIFPDDNRFREIIKDVGVAIIGQTSSLAPADKRFYATRDITATVDSI  180
                           GGT DKLES PGF        F       G AIIGQT  L PADK  YA RD TATV SI

1brwa.pdb             178  PLIASSIMSKKIAAGADAIVLDVKTGAGAFMKKLDEARRLARVMVDIGKRVGRRTMAVIS  237
2tpt.pdb              181  PLITASILAKKLAEGLDALVMDVKVGSGAFMPTYELSEALAEAIVGVANGAGVRTTALLT  240
                           PLI  SI  KK A G DA V DVK G GAFM        LA   V      G RT A   

1brwa.pdb             238  DMSQPLGYAVGNALEVKEAIETLKGNGP-HDLTELCLTLGSHMVYLAEKAPSLDEARRLL  296
2tpt.pdb              241  DMNQVLASSAGNAVEVREAVQFLTGEYRNPRLFDVTMALCVEMLISGKLAKDDAEARAKL  300
                           DM Q L    GNA EV EA   L G      L      L   M      A    EAR  L

1brwa.pdb             297  EEAIRSGAAIAAFKTFLAAQGGDASVVDDLD-KLPKAAYTSTVTAAADGYVAEMAADDIG  355
2tpt.pdb              301  QAVLDNGKAAEVFGRMVAAQKGPTDFVENYAKYLPTAMLTKAVYADTEGFVSEMDTRALG  360
                                 G A   F    AAQ G    V      LP A  T  V A   G V EM     G

1brwa.pdb             356  TAAMWLGAGRAKAEDVIDLAVGIVLHKKIGDRVQKGEALATIHSNRPD-VLDVKEKIEAA  414
2tpt.pdb              361  MAVVAMGGGRRQASDTIDYSVGFTDMARLGDQVDGQRPLAVIHAKDENNWQEAAKAVKAA  420
                            A    G GR  A D ID  VG       GD V     LA IH               AA

1brwa.pdb             415  IRLSPQPVARPPLIYETIV-  433
2tpt.pdb              421  IKLADKAPESTPTVYRRISE  440
                           I L        P  Y  I  


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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