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# Program: MUSTANG v0.1: A  Multiple structural alignment algorithm
# Authors: A. S. Konagurthu, P. J. Stuckey, J. C. Whisstock, and A. M. Lesk
# Rundate: Thu Aug 11 16:22:39 2005
# Report_file: AMLSE.html
################################################################################################
#====================================
# Aligned_structures: 7
#   1: 3EST.pdb
#   2: 2PKA.pdb
#   3: 1TON.pdb
#   4: 3RP2.pdb
#   5: 4PTP.pdb
#   6: 5CHA.pdb
#   7: 1PPB.pdb
#
# Length:        316
# Identity:       32/316 ( 10.1%)  (Calculated as the percentage of conserved columns in the alignment.)
# Similarity:     53/316 ( 16.8%)  (Calculated as the percentage of semi-conserved columns in the alignment)
# Gaps:          111/316 ( 35.1%)  (Calculated as the percentage of columns with atleast one gap.)

#===========================================ALIGNMENT START=========================================


3EST.pdb                1  --------------------------------------VVGGTEAQRNSWPSQISLQYRS   22
2PKA.pdb                1  --------------------------------------IIGGRECEKNSHPWQVAIYHY-   21
1TON.pdb                1  --------------------------------------IVGGYKCEKNSQPWQVAVIN--   20
3RP2.pdb                1  --------------------------------------IIGGVESIPHSRPYMAHLDIVT   22
4PTP.pdb                1  --------------------------------------IVGGYTCGANTVPYQVSLNS--   20
5CHA.pdb                1  --------CGVPAIQPV---------------------IVNGEEAVPGSWPWQVSLQDK-   30
1PPB.pdb                1  TFGSGEADCGLRPLF--EKKSLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRK-   57
                                                                 i  G        P q       

3EST.pdb               23  -GSSWAHTCGGTLIRQNWVMTAAHCVD-R-------ELTFRVVVGEHNLNQNNG-TEQYV   72
2PKA.pdb               22  ----SSFQCGGVLVNPKWVLTAAHCK----------NDNYEVWLGRHNLFENEN-TAQFF   66
1TON.pdb               21  ----EY-LCGGVLIDPSWVITAAHCY----------SNNYQVLLGRNNLFKDEP-FAQRR   64
3RP2.pdb               23  EKGLRV-ICGGFLISRQFVLTAAHCK----------GREITVILGAHDVRKRES-TQQKI   70
4PTP.pdb               21  ----GYHFCGGSLINSQWVVSAAHCY----------KSGIQVRLGEDNINVVEG-NEQFI   65
5CHA.pdb               31  ---TGFHFCGGSLINENWVVTAAHCG--------V-TTSDVVVAGEFDQGSSSE-KIQKL   77
1PPB.pdb               58  --SPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKIS  115
                                   CGg Li   wV tAAHC                V  G            q  

3EST.pdb               73  GVQKIVVHPYWN----T----DDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTI----  120
2PKA.pdb               67  GVTADFPHPGFNLSAD----GKDY--SHDLMLLRLQSPAKITDAVKVLELPT--QE----  114
1TON.pdb               65  LVRQSFRHPDYI----PLIPVHDH--SNDLMLLHLSEPADITGGVKVIDLPT--KE----  112
3RP2.pdb               71  KVEKQIIHESYN----S----VPN--LHDIMLLKLEKKVELTPAVNVVPLPSPSDF----  116
4PTP.pdb               66  SASKSIVHPSYN----S----NTL--NNDIMLIKLKSAASLNSRVASISLPT--SC----  109
5CHA.pdb               78  KIAKVFKNSKYN----S----LTI--NNDITLLKLSTAASFSQTVSAVCLPSASDD----  123
1PPB.pdb              116  MLEKIYIHPRYN----WR---ENL--DRDIALMKLKKPVAFSDYIHPVCLPDRET-AASL  165
                                  h   n                D  L  L         v    LP         

3EST.pdb              121  LANNSPCYITGWGLTRTN-----G-QLAQTLQQAYLPTVDYAICS-SSSYW-GSTVKNSM  172
2PKA.pdb              115  PELGSTCEASGWGSIEPGPDD--F-EFPDEIQCVQLTLLQNTFCA-DA---HPDKVTESM  167
1TON.pdb              113  PKVGSTCLASGWGSTNPS--E--M-VVSHDLQCVNIHLLSNEKCIETY---KDNV-TDVM  163
3RP2.pdb              117  IHPGAMCWAAGWGKTGVR-----D-PTSYTLREVELRIMDEKACV-DY---RY-YEYKFQ  165
4PTP.pdb              110  ASAGTQCLISGWGNTKSS--G--T-SYPDVLKCLKAPILSDSSCK-SA---YPGQITSNM  160
5CHA.pdb              124  FAAGTTCVTTGWGLTRY-------ANTPDRLQQASLPLLSNTNCK-KY---WGTKIKDAM  172
1PPB.pdb              166  LQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-DS---TRIRITDNM  221
                              g  c   GWG                 l            C               m

3EST.pdb              173  VCAG-GD---GVRSGCQGDSGGPLHCLV-N-GQYAVHGVTSFVSRLGCNVTRKPTVFTRV  226
2PKA.pdb              168  LCAGYLP---GGKDTCMGDSGGPLICN------GMWQGITSWGHT-PCGSANKPSIYTKL  217
1TON.pdb              164  LCAGEME---GGKDTCAGDSGGPLICD------GVLQGITSGGAT-PCAKPKTPAIYAKL  213
3RP2.pdb              166  VCVGSPT---TLRAAFMGDSGGPLLCA------GVAHGIVSYGHPDA---KP-PAIFTRV  212
4PTP.pdb              161  FCAGYLE---GGKDSCQGDSGGPVVCS------GKLQGIVSWGSG--CAQKNKPGVYTKV  209
5CHA.pdb              173  ICAGA-----SGVSSCMGDSGGPLVCKK-N-GAWTLVGIVSWGSS--TCSTSTPGVYARV  223
1PPB.pdb              222  FCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEG--CDRDGKYGFYTHV  279
                            CaG           c GDSGGP  c           Gi S g          p      

3EST.pdb              227  SAYISWINNVIASN--  240
2PKA.pdb              218  IFYLDWIDDTITENP-  232
1TON.pdb              214  IKFTSWIKKVMKENP-  228
3RP2.pdb              213  STYVPWINAVIN----  224
4PTP.pdb              210  CNYVSWIKQTIASN--  223
5CHA.pdb              224  TALVNWVQQTLAAN--  237
1PPB.pdb              280  FRLKKWIQKVIDQFGE  295
                                Wi         


#=========================================ALIGNMENT END=============================================
#LEGEND:
#
# Colours indicate the chemical nature of the amino acid;
# Red         = small hydrophobic including aromatic,{A,F,I,L,M,P,V,W}
# Blue        = Acidic,{D,E}
# Magenta     = Basic,{K,R} and
# Green       = Basic amino acids with hydroxyl groups and/or amine groups {C,G,H,N,Q,S,T,Y}.
#
# The "markup row" below each stretch of the multiple alignment is used to mark completely conserved
# residue (denoted in UPPERCASE) and semi-conserved reside ( denoted in lowercase) in a column of the alignment.
#
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